BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD05RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1354 0.0
>3x_Contig1806
Length = 53694
Score = 1354 bits (683), Expect = 0.0
Identities = 707/715 (98%)
Strand = Plus / Minus
Query: 50 ttcttttcttcttccttggccaagtatctacctctgataacgttaccgatagaggctaat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13401 ttcttttcttcttccttggccaagtatctacctctgataacgttaccgatagaggctaat 13342
Query: 110 tcttcatacttagcgatgtatttacctttagtggaatcgtaaccatcatcgtacaaccat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13341 tcttcatacttagcgatgtatttacctttagtggaatcgtaaccatcatcgtacaaccat 13282
Query: 170 tcttcagccttagctaacatatttcttagcttctccttttcttcatctgaagcgaatgga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13281 tcttcagccttagctaacatatttcttagcttctccttttcttcatctgaagcgaatgga 13222
Query: 230 gcatattcttcatctaactttcctctcaaagtgtagatgtattcttctaaggtgttctta 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13221 gcatattcttcatctaactttcctctcaaagtgtagatgtattcttctaaggtgttctta 13162
Query: 290 cgatcttctgtttcgaaaactagcttgtcttgagcagataattcattttccttttcgatc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13161 cgatcttctgtttcgaaaactagcttgtcttgagcagataattcattttccttttcgatc 13102
Query: 350 agttcgttcaaggtcttttcatccaatgcaaaggtgtgtgcgacgatagttaatgaatct 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13101 agttcgttcaaggtcttttcatccaatgcaaaggtgtgtgcgacgatagttaatgaatct 13042
Query: 410 ttcttcactgttttggtgaccttcttatattctggttcagtaccctctggggcatcagct 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13041 ttcttcactgttttggtgaccttcttatattctggttcagtaccctctggggcatcagct 12982
Query: 470 ggtggtgggactaattcttcaacttcaatatcgtgaatagtgtaagcatcttcaacagtg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12981 ggtggtgggactaattcttcaacttcaatatcgtgaatagtgtaagcatcttcaacagtg 12922
Query: 530 tgcaaaccggatggatcacatctcaattttagtttaactgggatggaagattcaccttca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12921 tgcaaaccggatggatcacatctcaattttagtttaactgggatggaagattcaccttca 12862
Query: 590 tttagttgaacaccattaacttcccacttagcgatttggactggaacatcttctgggtat 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12861 tttagttgaacaccattaacttcccacttagcgatttggactggaacatcttctggtaat 12802
Query: 650 tctgctttgttggtgtatttggcttcgaaagtgaagtcaccggtacggggtaatgtgatc 709
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 12801 tctgctttgttggtgtatttggcttcgatagtgaagtcaccggtacggtgtaatgtgatc 12742
Query: 710 agcttaatagatgggtaagtagaaccagcttgggaaacttctaaaggatcttcat 764
|||||| ||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 12741 agcttagtagatgggtaagtagaaccagctgggaaaacttctaaatgatcttcat 12687
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7477
Number of Sequences: 1807
Number of extensions: 7477
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)