BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD06RM1.SCF screened BAC_end
(1080 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 716 0.0
>3x_Contig1764
Length = 22510
Score = 716 bits (361), Expect = 0.0
Identities = 418/433 (96%), Gaps = 3/433 (0%)
Strand = Plus / Minus
Query: 109 ctttgcaatggaactaacacactgtgagagaaatgtcccagttttatttaatatagaaaa 168
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5442 ctttgcaatg-aactaacacactgtgagagaaatgtcccagttttatttaatatagaaaa 5384
Query: 169 atctcaaacgacagtaaccggaaattgtcgctgaggatcacctacgtattacaatggcaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5383 atctcaaacgacagtaaccggaaattgtcgctgaggatcacctacgtattacaatgg-aa 5325
Query: 229 gagtaggccaacttaattagaaggatgagaagctgtgtagtaaacgaaaatttgttattg 288
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 5324 gagtagga-aacttaattagaaggatgagaagctgtgtagtaaacgaaaatttgtaaatg 5266
Query: 289 accagaatatattgtctacccagattgaagctcaagctttgtcatgttccggagggaata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5265 accagaatatattgtctacccagattgaagctcaagctttgtcatgttccggagggaata 5206
Query: 349 atacacacaaaaggtccgatccgtctgagagcactgttgatctgtaagaagattcgtggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5205 atacacacaaaaggtccgatccgtctgagagcactgttgatctgtaagaagattcgtggt 5146
Query: 409 gtcttccagaaaaaaaaagcttctgggaaagattcgatatttttttaattgaaccttgaa 468
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 5145 gtcttccagaaaaaaaaagcttttgggaaagattcgatatttttttaattgaacgttgaa 5086
Query: 469 aaattatccaaacgcgttaaaactttcagattcttgaacagaagtaaattcttgatctac 528
||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 5085 aaattattcaaacgtgttaaaaatttcagattcttgaacagaatcaaattcttgatctac 5026
Query: 529 atagggtgtgttt 541
| ||| |||||||
Sbjct: 5025 aaaggttgtgttt 5013
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8355
Number of Sequences: 1807
Number of extensions: 8355
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1080
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1064
effective length of database: 10,329,639
effective search space: 10990735896
effective search space used: 10990735896
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)