BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD07FM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1701 1340 0.0
3x_Contig1790 113 6e-25
>3x_Contig1701
Length = 10926
Score = 1340 bits (676), Expect = 0.0
Identities = 768/788 (97%), Gaps = 8/788 (1%)
Strand = Plus / Minus
Query: 85 atagtggatactgttattgttttgaagaagacttttatcactttgaatatctcacagaag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6461 atagtggatactgttattgttttgaagaagacttttatcactttgaatatctcacagaag 6402
Query: 145 aaacaaagaagaggatactgaaagaaggacctctttgacttcaccggtatttatctgagc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6401 aaacaaagaagaggatactgaaagaaggacctctttgacttcaccggtatttatctgagc 6342
Query: 205 ataatgttaaactttaaagctcaactaaggagcacggtgacaatttacgttctgatgtcg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6341 ataatgttaaactttaaagctcaactaaggagcacggtgacaatttacgttctgatgtcg 6282
Query: 265 tcaaggttatcattctattattttccaaattacatcggtcagtgcaattgcttttatcac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6281 tcaaggttatcattctattattttccaaattacatcggtcagtgcaattgcttttatcac 6222
Query: 325 atttacattggctgcccggtaagttctgcttatcctacgaacaatgcatcgaaaggaagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6221 atttacattggctgcccggtaagttctgcttatcctacgaacaatgcatcgaaaggaagt 6162
Query: 385 tttgcgcattctatgaaatatgaggcatatgcgggtatgctcgatgaatttagtgctcgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6161 tttgcgcattctatgaaatatgaggcatatgcgggtatgctcgatgaatttagtgctcgg 6102
Query: 445 aagtaaatgaaataaaatgagaaaaaccgcagtattataggtgtgtttgcctactgcacc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6101 aagtaaatgaaataaaatgagaaaaaccgcagtattataggtgtgtttgcctactgcacc 6042
Query: 505 ctctgtcgctgctgctcttcaggaaatatagcaaaaataaataaactggtgttaatgatg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6041 ctctgtcgctgctgctcttcaggaaatatagcaaaaataaataaactggtgttaatgatg 5982
Query: 565 ctgcacctgatgcatgggagaagtgtcgaaaatcattgaacttgctcagacaagcattta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5981 ctgcacctgatgcatgggagaagtgtcgaaaatcattgaacttgctcagacaagcattta 5922
Query: 625 caaagtatttccagctcaccaaaaaattagtgcagggtctatcgctcatcctaattctat 684
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5921 caaagtatttccagctcaccaagaaattagtgcagggtctatcgctcatcctaattctat 5862
Query: 685 gttgttccacagcagtgtgcgggctttgtctaaaccgccactttatttggaataatacgg 744
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 5861 gttgttccacagcagtgtgcgggc-ttgtctaagccgccacttta-ttggaataatacgg 5804
Query: 745 aacaccagggcttgaacccgttataactaaaaatcaaggctacaacacccaatagttgaa 804
|||||||||| |||| ||| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 5803 -acaccagggc-tgaagccgctataact-aagatcaaggctacaacacccaatagttgaa 5747
Query: 805 cattcaatccaaaagt-tttaagtgggatgggttctttcgttcaatttcccaatccaatt 863
||| |||| |||||| | ||||| |||||| ||| |||||||||||||||| |||||||
Sbjct: 5746 catcaaatcaaaaagtatataagt-ggatggtttc-ttcgttcaatttcccattccaatt 5689
Query: 864 tggcaacc 871
|| |||||
Sbjct: 5688 tgacaacc 5681
>3x_Contig1790
Length = 27369
Score = 113 bits (57), Expect = 6e-25
Identities = 122/137 (89%), Gaps = 5/137 (3%)
Strand = Plus / Plus
Query: 684 tgttgttccacagcagtgtgcgggctttgtctaaaccgccactttatttggaataatacg 743
|||||||||| |||||||||||||| || ||||| ||||||||||||| |||||||||||
Sbjct: 6996 tgttgttccatagcagtgtgcgggcctt-tctaagccgccactttatt-ggaataatacg 7053
Query: 744 gaacaccagggcttgaacccgttataactaaaaatcaaggctacaacacccaatagttga 803
||| | ||||||| ||| ||| ||||||||| | ||||||||||||||||||||||||||
Sbjct: 7054 gaa-agcagggct-gaagccgctataactaaga-tcaaggctacaacacccaatagttga 7110
Query: 804 acattcaatccaaaagt 820
|||| |||| ||||||
Sbjct: 7111 acatcaaatcaaaaagt 7127
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6375
Number of Sequences: 1807
Number of extensions: 6375
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)