BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD07RM1.SCF screened BAC_end
(884 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig756 549 e-156
3x_Contig1209 155 2e-37
>3x_Contig756
Length = 1838
Score = 549 bits (277), Expect = e-156
Identities = 382/409 (93%), Gaps = 6/409 (1%)
Strand = Plus / Plus
Query: 268 gtaattgtgggtaaaaatttcggatcatacgtcactcacgaaaagggctactttgtttac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaattgtgggtaaaaatttcggatcatacgtcactcacgaaaagggctactttgtttac 60
Query: 328 ttctacattggcccattggcattcttggtgttcaagacggcctagtcacagtcctgtcaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttctacattggcccattggcattcttggtgttcaagacggcctagtcacagtcctgtcaa 120
Query: 388 taaaatcagagtctaatgtaatatcaaatttactaaatacccatcgtctcttcttgttaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 taaaatcagagtctaatgtaatatcaaatttactaaatacccatcgtctctccttgttaa 180
Query: 448 atattcttgatagaatttgtttttggtttcagccctatttacttatgtaaaaatagcaag 507
|||||||||||||| |||| ||||| |||||| ||||||||||||||||||| ||||||
Sbjct: 181 atattcttgatagattttg-ttttgttttcag-cctatttacttatgtaaaactagcaat 238
Query: 508 gtcatcatctagccgggatacgaaatcattaaaatccgagaccaactttggtgccttcat 567
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 239 gtcatcatctagccgggatacgaaatcatcaaaatccgagaccaactttgttgcctccat 298
Query: 568 aattttcgtggcatgaatatttattactaaataggggcccccccaaaaccccgttgaagc 627
||| |||||| ||||| || ||||||||||||| |||| ||| ||| |||| || | |||
Sbjct: 299 aatcttcgtgtcatgatta-ttattactaaata-gggcacccacaacacccagtag-agc 355
Query: 628 ggtctggacattgcttattttcgagttttgaaagcttggtttcattttg 676
|||||| |||||||| | |||||||| | ||||||||| ||||||||||
Sbjct: 356 ggtctgtacattgctca-tttcgagtctggaaagcttgttttcattttg 403
>3x_Contig1209
Length = 5033
Score = 155 bits (78), Expect = 2e-37
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 48 ctgatatcgtatgttaatcttttttgatttctcttgttattaatcacgtccagggatact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 ctgatatcgtatgttaatcttttttgatttctcttgttattaatcacgtccagggatact 22
Query: 108 aaccatttttttactttg 125
||||||||||||||||||
Sbjct: 21 aaccatttttttactttg 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7609
Number of Sequences: 1807
Number of extensions: 7609
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 884
length of database: 10,358,551
effective HSP length: 16
effective length of query: 868
effective length of database: 10,329,639
effective search space: 8966126652
effective search space used: 8966126652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)