BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD08FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig993 882 0.0
>3x_Contig993
Length = 4399
Score = 882 bits (445), Expect = 0.0
Identities = 518/537 (96%), Gaps = 4/537 (0%)
Strand = Plus / Plus
Query: 88 ccaacgctatctaactggctagttggcatagattcgatgtatggtacagtttcctcgcat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 ccaacgctatctaactggctagttggcatagattcgatgtatggtacagtttcctcgcat 3652
Query: 148 ggattggctgggacaatgtcattgacggaaacagaacaacagattgaattggacgcagaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 ggattggctgggacaatgtcattgacggaaacagaacaacagattgaattggacgcagaa 3712
Query: 208 gaagctcattatgttcagcctccaaatatcaagactgtatgggacaatgttactttgcca 267
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 gaagctcatcatgaacagcctccaaatatcaagactgtatgggacaatgttactttgcca 3772
Query: 268 atcactttcactatggacgctcttaaagatattggacaattaacaggagtttcaaattct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 atcactttcactatggacgctcttaaagatattggacaattaacaggagtttcaaattct 3832
Query: 328 ctttctttgttcacgaatatgaaaccaagttggaatctctggtcttctagttcagaaaat 387
|||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct: 3833 ctttctttgttcacgaatat-aaaccaagttggaatatctggtattctagttcagaaaat 3891
Query: 388 ggcgccggctcggcaaaattagacgataagg-atgaatacagttggcttatatccccgtt 446
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3892 ggcgaaggctcggcaaaattagacgataaggaatgaatacagttggcttatatccccgtt 3951
Query: 447 gaacccctcctttcttccgaaagtttatcaaatgagaaagttctacctccagtttgatga 506
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3952 gaacccctcctttcttccgaaagtttatcaaatgagaaagttctacctcaagtttgatga 4011
Query: 507 ttgg-agccagtataacattctattttggaagttcaaagatgttatagttgctgtaatag 565
|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4012 ttggaagcaagtataaaattctattttggaagttcaaagatgttatagttgctgtaataa 4071
Query: 566 tagatcccagcttaaagaagataagtgaagaaag-ctttttgatgaaattacaggaa 621
||||| |||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 4072 tagatgccagcttaaagaagataagtgaagaaagattttttgatgaattaacaggaa 4128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7831
Number of Sequences: 1807
Number of extensions: 7831
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)