BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD08RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1200 1164 0.0
>3x_Contig1200
Length = 5130
Score = 1164 bits (587), Expect = 0.0
Identities = 684/706 (96%), Gaps = 8/706 (1%)
Strand = Plus / Plus
Query: 45 ctttatgtggatacttttgcca-cgacgtttctattatttccatttacttagataagtcc 103
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2732 ctttatgtggatacttttgccaacgacgtttctattatttccatttacttagataagtcc 2791
Query: 104 caacaagatcatgacatcttgaaagaattgggattgtcgttgttacaagtggaaagagaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2792 caacaagatcatgacatcttgaaagaattgggattgtcgttgttacaagtggaaagagaa 2851
Query: 164 gcctctttattatatgcaattcctcaaaactcgttcaaagacttgtatcaatccatacaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2852 gcctctttattatatgcaattcctcaaaactcgttcaaagacttgtatcaatccagacaa 2911
Query: 224 ttctctccacaagaatccatctatgcgcatatcggttccatcttcatcaaccatttcatt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2912 ttctctccacaagaatccatctatgcgcatatcggttccatcttcatcaaccatttcatt 2971
Query: 284 aaccgtcttggttccagttacgattctttaatcaggcaattaaacgtaaaaccagatgat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2972 aaccgtcttggttccagttacgattctttaatcaggcaattaaacgtaaaaccagatgat 3031
Query: 344 actttgttgaacgaactcttagctaatttgaagcgtaagttgagaactgaaacttacact 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3032 actttgttgaacgaactcttagctaatttgaagcgtaagttgagaactgaaacttacact 3091
Query: 404 caacaaatgatcatacacgtccttcacaagtacaaggaaattgtatcaaagttatacaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3092 caacaaatgatcatacacgtccttcacaagtacaaggaaattgtatcaaagttatacaaa 3151
Query: 464 tcgtttgctcaagtccattatcctacaaagacttctgctactgggtctggtaaccaaaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3152 tcgtttgctcaagtccattatcctacaaagacttctgctactgggtctggtaaccaaaaa 3211
Query: 524 ttgcaaatgactttgtcatattaacgtctatct-aattagaaccattccaaagtgaggaa 582
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 3212 ttgcaaatgactttgtcatatcaacgtctatctcaattagaaccattccaaagtgaggaa 3271
Query: 583 gaatt-aacttgtatttgaacaaggtcttccccaaccaattcttcagacctattgatctt 641
||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 3272 gaattcaacttgtatttgaacaaggtcttccccaa-cgattctccagacctattgatctt 3330
Query: 642 gagaaccttaaacttgttcaacaagtccattcttgaagactaatttttttattaccaaaa 701
||||||||||||||||||||||||||| | |||||||||||||||| || || |||| ||
Sbjct: 3331 gagaaccttaaacttgttcaacaagtcta-tcttgaagactaatttcttcatcaccagaa 3389
Query: 702 agatgggcattttttttcaaggttggacccctgctttaatnttacc 747
| ||| || ||| |||||| |||||| |||||||||||| |||||
Sbjct: 3390 aagtggcca-tttctttcaa-gttgga-ccctgctttaattttacc 3432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9474
Number of Sequences: 1807
Number of extensions: 9474
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)