BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZD09FM1.SCF screened BAC_end
         (1143 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1802                                                         404   e-112

>3x_Contig1802 
          Length = 45229

 Score =  404 bits (204), Expect = e-112
 Identities = 230/239 (96%)
 Strand = Plus / Minus

                                                                         
Query: 121   tcttgaagaatgttgcatcatcaatcaggtaacttagcaattgacgattaaactaacagt 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30121 tcttgaagaatgttgcatcatcaatcaggtaacttagcaattgacgattaaactaacagt 30062

                                                                         
Query: 181   aagatgtttgagcttacattnatatgttgcaacggaaccgaaagaaatcatcccaatgat 240
             |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct: 30061 aagatgtttgagcttacatttatatgttgtaacggaaccgaaagaaatcattccaatgat 30002

                                                                         
Query: 241   acaacctgcactttctccgaaataatgctgataaacaggcgtgagaaacagtagctctga 300
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30001 acaacctgcacttactccgaaataatgctgataaacaggcgtgagaaacagtagctctga 29942

                                                                        
Query: 301   gactgaataactcaacattcacccagcgatcagtttttctttagctatttcggtttatt 359
             |||||||||||||||||||||| ||| |||||||| ||||||||||||| || ||||||
Sbjct: 29941 gactgaataactcaacattcacacagtgatcagttattctttagctattccgctttatt 29883


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,024
Number of Sequences: 1807
Number of extensions: 10024
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 1143
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1127
effective length of database: 10,329,639
effective search space: 11641503153
effective search space used: 11641503153
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)