BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD09RM1.SCF screened BAC_end
(1139 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1660 420 e-117
>3x_Contig1660
Length = 13166
Score = 420 bits (212), Expect = e-117
Identities = 270/288 (93%), Gaps = 2/288 (0%)
Strand = Plus / Minus
Query: 74 ctttgctatcacagtatctctgtacatcgccaagatcttgccacgacgcgatttcatgta 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11055 ctttgctatcacagtatctctgtacatcgccaagatcttgccacgacgcgatttcatgta 10996
Query: 134 gtctactttactcgagttattagtggttgcgctagtagaggctgcaggtgtgctgagaac 193
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 10995 gtctactttactcgagttattagtggttgtgctagtagaggctgcaggtgtgctgagaac 10936
Query: 194 actgtgagttgccgctccagcagcaccagcaccattgctgatagcactcgtgtttctgct 253
||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 10935 actgtgagttgtcgctccagcagcaccagcaccattgctgatagcactcgtgctgctgct 10876
Query: 254 gctgctgctgctgntgcttttgttttcattgcttcctgttttagatactttccccacctt 313
||||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct: 10875 gctgctgctgctgttgcttttgtttccattgctccctgtatgagatactttccccacctt 10816
Query: 314 ggccccgtttcaacctttttctcatctttggcttnnttccncaccaaa 361
|||||||||||| || |||||||| |||||| |||| |||||||
Sbjct: 10815 -gccccgtttcaa-ctctttctcattcttggctagtttccccaccaaa 10770
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,843
Number of Sequences: 1807
Number of extensions: 41843
Number of successful extensions: 6332
Number of sequences better than 1.0e-20: 1
length of query: 1139
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1123
effective length of database: 10,329,639
effective search space: 11600184597
effective search space used: 11600184597
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)