BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD10FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1703 862 0.0
>3x_Contig1703
Length = 17919
Score = 862 bits (435), Expect = 0.0
Identities = 493/503 (98%), Gaps = 7/503 (1%)
Strand = Plus / Minus
Query: 86 taatttcaaagacggggcctcttatcttctaagtagttactataatttcactgtgaatca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 taatttcaaagacggggcctcttatcttctaagtagttactataatttcactgtgaatca 525
Query: 146 ccattgatgatgatctcttttcagtttttcaggttaataataagagtcccattttctgca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ccattgatgatgatctcttttcagtttttcaggttaataataagagtcccattttctgca 465
Query: 206 gatatatgtctaaaatgacaaagaataataacaagtaacatggtattgaccgaaggtacc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gatatatgtctaaaatgacaaagaataataacaagtaacatggtattgaccgaaggtacc 405
Query: 266 ctccaccttcacgaactgagtaagttgctctcgcaaattgtgccaactggatgtttcaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctccaccttcacgaactgagtaagttgctctcgcaaattgtgccaactggatgtttcaca 345
Query: 326 ctaacaaaaattgaaatcacgtgatattataaacaactcacctttaagtaaattttcaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctaacaaaaattgaaatcacgtgatattataaacaactcacctttaagtaaattttcaca 285
Query: 386 tgtcatttttcatgtgacttaaaacccttcgttccatgaaattctgatttgcagaaacat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgtcatttttcatgtgacttaaaacccttcgttccatgaaattctgatttgcagaaacat 225
Query: 446 ctagcgcaggacacatatcgaatcttcctaacatatccaggaataaa-cagaatataaat 504
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 224 ctagcgcaggacacaaatcgaatcttcctaacatatccaggaataaagcagaatataaat 165
Query: 505 ataattaggttttcaactaccaactttttcattatntcttgttctcagaacatccaactt 564
|||| ||||||| ||||||||||| |||||||||| || ||||||||||||||| ||| |
Sbjct: 164 ataa-taggtttccaactaccaac-ttttcattat-tc-tgttctcagaacatcgaac-t 110
Query: 565 tttattgtccttttcaaacttat 587
|||||||||| ||||||||||||
Sbjct: 109 tttattgtcc-tttcaaacttat 88
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8266
Number of Sequences: 1807
Number of extensions: 8266
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)