BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD10RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig475 918 0.0
>3x_Contig475
Length = 2085
Score = 918 bits (463), Expect = 0.0
Identities = 504/515 (97%), Gaps = 2/515 (0%)
Strand = Plus / Minus
Query: 49 ttgttgtgcctgacatgctaaagcacgccccattatttaagaagactgccgtatcgaaac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttgttgtgcctgacatgctaaagcacgccccattatttaagaagactgccgtatcgaaac 655
Query: 109 ctcctccaccaattcgtggcccaaaaaggagataggaatactcacttcaagttaattaaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctcctccaccaattcgtggcccaaaaaggagataggaatactcacttcaagttaattaaa 595
Query: 169 cctccagcattccacaactatttctatatatagtgtaacattaaataaacattattcacg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cctccagcattccacaactatttctatatatagtgtaacattaaataaacattattcacg 535
Query: 229 ttaaaaagcattacaactacgtatttacctctttgttccctcaggttttttccaactttc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttaaaaagcattacaactacgtatttacctctttgttccctcaggttttttccaactttc 475
Query: 289 attgtccatgattcttagttttgttatttttatggatgacaagttgcaaatatattaaac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 attgtccatgattcttagttttgttatttttatggatgacaagttgcaaatatattaaac 415
Query: 349 cattctacttcaaacaacgaagagcacagggacgaattgaatccaggggtgagcagaaac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cattctacttcaaacaacgaagagcacagggacgaattgaatccaggggtgagcagaaac 355
Query: 409 acctcttacgcaattgtacagcgtgacacatttagcagccggtacctaagacttccaaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 acctcttacgcaattgtacagcgtgacacatttagcagccggtacctaagacttccaaaa 295
Query: 469 aatagtcaaaatgaatggatcatttgacgtttcgggaagatcagttgctttaattttacc 528
|||| ||||||||||||| |||||| || |||| | |||||||||||||| | |||||||
Sbjct: 294 aatactcaaaatgaatggctcatttcacctttc-gcaagatcagttgcttcagttttacc 236
Query: 529 acttaaaattcgttggatccctccacttcatggaa 563
|||| |||||||||| |||| ||||||||||||||
Sbjct: 235 actt-aaattcgttgaatccttccacttcatggaa 202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8782
Number of Sequences: 1807
Number of extensions: 8782
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)