BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD11RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1051 0.0
>3x_Contig1799
Length = 39855
Score = 1051 bits (530), Expect = 0.0
Identities = 681/714 (95%), Gaps = 13/714 (1%)
Strand = Plus / Plus
Query: 45 ctttccttttactatatcattatctctatgcctaattcttctctcttcctattttcttaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27244 ctttccttttactatatcattatctctatgcctaattcttctctcttcctattttcttaa 27303
Query: 105 taaataacccgtttcctctggacccttttctcctatcgtttgtaggttttctccgagaag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27304 taaataacccgtttcctctggacccttttctcctatcgtttgtaggttttctccgagaag 27363
Query: 165 aattatcgtttgtgacagttctatatatatatatgtatttgtacattttctttttttcgc 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 27364 aattatcgtttgtgacagttctatatatatatatgtatttgtacattttcttttcttcgc 27423
Query: 225 tggtgtatactaaaacttatttcagttataaattaaggtttactattcttatggttagcg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27424 tggtgtatactaaaacttatttcagttataaattaaggtttactattcttatggttagcg 27483
Query: 285 tagcaaataatcagtcttggatggtaaggttcattattgcttggctatttgcatgtgata 344
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27484 tag-aaataatcagtcttggatggtaaggttcattattgcttggctatttgcatgtgata 27542
Query: 345 taatgtttttgccttagaagctttattttcaatgatttttaaacacgaaatcgtaaattt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27543 taatgtttttgccttagaagctttattttcaatgatttttaaacacgaaatcgtaaattt 27602
Query: 405 caggttacttaactgctactgtgaaatgcgatttctttaaggattgtggaatatctaggt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603 caggttacttaactgctactgtgaaatgcgatttctttaaggattgtggaatatctaggt 27662
Query: 465 attcaacccttggtgtttcaagtatctgctaggtatacttcaatagcgaaaactgtgcat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27663 attcaacccttggtgtttcaagtatctgctaggtatacttcaatagcgaaaactgtgcat 27722
Query: 525 tttataatggtgtcaaaaaatgttgcaacctacggatattgaaattgc-aaagtaaaa-g 582
|| ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |
Sbjct: 27723 ttcataatggtgtc-aaaaatgttgcaacctacggatattgtaattgcaaaagtaaaagg 27781
Query: 583 ttatccaccatggccagcgatggttattccg-ttgaaatattccct-accaaa-tcttac 639
||||||||||||||||||||||||||| ||| |||| ||| | ||| | |||| ||||||
Sbjct: 27782 ttatccaccatggccagcgatggttataccgtttgagataatacctcagcaaattcttac 27841
Query: 640 gaaaaataaatcc-agctttccgatggatcggacc-agaattagat-gtgctgagaat-t 695
|||||||| |||| ||||| | |||| ||| |||| ||| | |||| ||||||||||| |
Sbjct: 27842 gaaaaatagatccaagcttccagatgaatcagaccaagattcagatagtgctgagaatat 27901
Query: 696 tggattttcaccggggcttactttt-agaaatttacttcgggagttaaccaatt 748
|| || |||||| | |||||||||| |||||||||| ||| |||||||||||||
Sbjct: 27902 tgaatattcacctgtgcttacttttaagaaatttac-tcgtgagttaaccaatt 27954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,759
Number of Sequences: 1807
Number of extensions: 15759
Number of successful extensions: 203
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)