BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE01FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1383 1162 0.0
>3x_Contig1383
Length = 6139
Score = 1162 bits (586), Expect = 0.0
Identities = 635/645 (98%), Gaps = 6/645 (0%)
Strand = Plus / Minus
Query: 88 tcttttcaaaatgtgaccacgagacaaattaggagataacttggagacgtaatggtataa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2183 tcttttcaaaatgtgaccacgagacaaattaggagataacttggagacgtaatggtataa 2124
Query: 148 ttcatcacatttttctttaacgacttccactgcatcactggtttctggtaattcaaccag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2123 ttcatcacatttttctttaacgacttccactgcatcactggtttctggtaattcaaccag 2064
Query: 208 agtatcacctttaccgcacacatacacttcatcctttcttgcatacatttctggcgagaa 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2063 agtatcaccttcaccgcacacatacacttcatcctttcttgcatacatttctggcgagaa 2004
Query: 268 atacttgttggaagatatcttcaattcggtaaatatagcatatggcgaaacagttccggt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2003 atacttgttggaagatatcttcaattcggtaaatatagcatatggcgaaacagttccggt 1944
Query: 328 ggatggtttgattgtgatggaatgtgctcttaaaccagagattggacaatccggcaatag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1943 ggatggtttgattgtgatggaatgtgctcttaaaccagagattggacaatccggcaatag 1884
Query: 388 tctagaagtccaaggtcccatacatagaacaacctggtcaacgtccaaaaggtcaactgg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1883 tctagaagtccaaggtcccatacatagaacaacctggtcaacgtccaaaaggtcaactgg 1824
Query: 448 ttcttgtaaacgttgttcttctggatcatcaactgttggaatgtacgatactcccgctgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1823 ttcttgtaaacgttgttcttctggatcatcaactgttggaatgtacgatactcccgctgc 1764
Query: 508 ggcacactgatcgttgaaatgcaactgtgacactttgcccaggattaaatccactgcccc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1763 ggcacactgatcgttgaaatgcaactgtgacactttgcccaggattaaatccactgcccc 1704
Query: 568 agtctccattgccttcaacagtagatagtgagtgaatttgaaaggatgtacttgagcagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 agtctccattgccttcaacagtagatagtgagtgaatttgaaaggatgtacttgagcagt 1644
Query: 628 ggagtcagttccaccaagagatgaccaatctctcaccaacccgttttttgatccaggtca 687
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 1643 ggagtcagttccaccaagagatgaccaatctctcaccaacc-gttttttgatccagttca 1585
Query: 688 aaatcacttacgtagacgttattggggtcttttagataatgcaat 732
|| ||||| | |||||||| || |||||||| ||||||||||||
Sbjct: 1584 aa-tcact-aggtagacgtaat--gggtcttt-agataatgcaat 1545
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6218
Number of Sequences: 1807
Number of extensions: 6218
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)