BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE01RM1.SCF screened BAC_end
(867 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1635 0.0
>3x_Contig1719
Length = 15804
Score = 1635 bits (825), Expect = 0.0
Identities = 832/833 (99%), Gaps = 1/833 (0%)
Strand = Plus / Minus
Query: 35 gctttcccacagatggtgttcgatcactgggccactctaggtactgacccattggaccca 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 gctttcccacagatggtgttcgatcactgggccactctaggtactgacccattggaccca 5181
Query: 95 tccaccaaggctggtgaaattgtcttggctgctagaaagagacaaggtatgaaggaagaa 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 tccaccaaggctggtgaaattgtcttggctgctagaaagagacaaggtatgaaggaagaa 5121
Query: 155 gttccaggctggcaagaatactacgataagttgtaatcaagctcttattgtagtctctcg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 gttccaggctggcaagaatactacgataagttgtaatcaagctcttattgtagtctctcg 5061
Query: 215 ttctccttcaatggaattttatatttgtacaaatacactcataccttattttgtatagct 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 ttctccttcaatggaattttatatttgtacaaatacactcataccttattttgtatagct 5001
Query: 275 cctatcttagaagtcttttaatcagtaagtatactttaatgcaatatactaacatataaa 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5000 cctatcttagaagtcttttaatcagtaagtatactttaatgcaatatactaacatataaa 4941
Query: 335 caaaaaaataagaacacgtagtccatttctattttcaaaatggagaacgatgggaagcat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4940 caaaaaaataagaacacgtagtccatttctattttcaaaatggagaacgatgggaagcat 4881
Query: 395 ttccatttcttttcatcgtgaaattcgattctttccccttttctaacccatctgatgtgc 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 ttccatttcttttcatcgtgaaattcgattctttccccttttctaacccatctgatgtgc 4821
Query: 455 tcggcgtagttatgagcttgatctaatttcttttatatttttgtttacattcacgtaaag 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 tcggcgtagttatgagcttgatctaatttcttttatatttttgtttacattcacgtaaag 4761
Query: 515 atcaagaaattatatcatggaagatgaaaaacctaatcatcgctgtgcctgatagaagaa 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 atcaagaaattatatcatggaagatgaaaaacctaatcatcgctgtgcctgatagaagaa 4701
Query: 575 atacataatagaggtgattccaggctgttcttacgagagccattcatagggtgtcacata 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4700 atacataatagaggtgattccaggctgttcttacgagagccattcatagggtgtcacata 4641
Query: 635 cttttgatatctccctcagttacaaatgtccattcctagtgatgcgaaacagctttatgc 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4640 cttttgatatctccctcagttacaaatgtccattcctagtgatgcgaaacagctttatgc 4581
Query: 695 tgaattccttcagcaagaggtaaaccagagtacatcagctcatcaagaaaagttagtgat 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 tgaattccttcagcaagaggtaaaccagagtacatcagctcatcaagaaaagttagtgat 4521
Query: 755 ggtcttgaacagagcattgtttgccttaaagaattatcccgaccctatatatcatcccta 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4520 ggtcttgaacagagcattgtttgccttaaagaattatcccgaccctatatatcat-ccta 4462
Query: 815 aagatctccttaaagttaaaggtattggacagactactatgaataaattatcg 867
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4461 aagatctccttaaagttaaaggtattggacagactactatgaataaattatcg 4409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7523
Number of Sequences: 1807
Number of extensions: 7523
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 867
length of database: 10,358,551
effective HSP length: 16
effective length of query: 851
effective length of database: 10,329,639
effective search space: 8790522789
effective search space used: 8790522789
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)