BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE02RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig521 1207 0.0
>3x_Contig521
Length = 2327
Score = 1207 bits (609), Expect = 0.0
Identities = 675/693 (97%), Gaps = 3/693 (0%)
Strand = Plus / Plus
Query: 44 gctttaacaacagaatcagtggacatctttcacttggttcttcttccgttctgtaaatca 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gctttaacaacagaatcagtggacatctttcacttggttcttcttccgttctgtaaatca 736
Query: 104 agaccaaacctaatctaatataacgtaatagtaagtattaaaccgttattatagtatacc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agaccaaacctaatctaatataacgtaatagtaagtattaaaccgttattatagtatacc 796
Query: 164 ttcaaatagtgtaacagataaagtagtcaaacaattttgttaaaccttggtttcaaactc 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 797 ttcaaatagtgtaacagataaagtagtcaaacaattttgttaaaccttggttccaaactc 856
Query: 224 aaacttccaacgcagccctgtgtgtctgtgcgtgtctatccggtgaagctggaattcgct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaacttccaacgcagccctgtgtgtctgtgcgtgtctatccggtgaagctggaattcgct 916
Query: 284 attgtcagaatccaggacgcagagtaccttggagtgcttattgatgaaaaagttgcgtgg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 attgtcagaatccaggacgcagagtaccttggagtgcttattgatgaaaaagttgcgtgg 976
Query: 344 gtaacaatgtatgtgggctacgggtttaaaatacatacctattccaatttaggtattata 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 gtaacaatgtatgtgggctacgggtttaaaatacatacctattccaatttaggtattata 1036
Query: 404 ttacaggacgaattcattttcatcctaacacaggcgcaacaaaatatgtaatggttgggt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 ttacaggacgaattcattttcatcctaacacaggcgcaacaaaatatgtaatggttgggt 1096
Query: 464 gtttaaaggacattattgaaatataatgagatgtacaggtgtataaaag-ggcagtccca 522
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1097 gtttaaaggacattattgaaatataatgagatgtacaggtgtataaaagtggcagtccca 1156
Query: 523 cgaaaattgttatcaatgtccgcatgctgattgaattatatataaagagagcgtatgaga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 cgaaaattgttatcaatgtccgcatgctgattgaattatatataaagagagcgtatgaga 1216
Query: 583 tgaggtatgctgtttgtatttccacgattaaaccgggggatttgttagacagttaatatt 642
|||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||
Sbjct: 1217 tgaggtatgctgtttgtattcacacgattaaa-cggtggtattgttagacagttaatatt 1275
Query: 643 aggattgggtttcaagtatgaagctttgtcctcactttaat-ataatagtaacagcatga 701
||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct: 1276 aggattgtgtttcaagtatgaagcttgttcgtcactttaataataatagtaacagcatga 1335
Query: 702 tccatacccactgctattactatacctaatttt 734
| || ||||||||||||||||||||| ||||
Sbjct: 1336 gcagtagccactgctattactatacctagtttt 1368
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7190
Number of Sequences: 1807
Number of extensions: 7190
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)