BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZE03FM1.SCF screened BAC_end
         (1143 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1682                                                         234   3e-61

>3x_Contig1682 
          Length = 16889

 Score =  234 bits (118), Expect = 3e-61
 Identities = 151/162 (93%)
 Strand = Plus / Plus

                                                                         
Query: 126   acaccacacccatttctttattgaattcttcgctatggatcttttgacccataacggtga 185
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14802 acacaacacccatttctttattgaattcttcgctatggatcttttgacccataacggtga 14861

                                                                         
Query: 186   agtcgttggtgttatggcttacaaccaagaagacggttccattcacagattccgtgctca 245
             ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 14862 agtcgttggtgttatggcttacaaccaagaagacggtaccatccacagattccgtgctca 14921

                                                       
Query: 246   caagacttttttttcttctggggggtacggttgtgcctactt 287
             ||||||  || |  || |||| ||||||||| ||||||||||
Sbjct: 14922 caagaccattatcgctactggtgggtacggtcgtgcctactt 14963


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,124
Number of Sequences: 1807
Number of extensions: 10124
Number of successful extensions: 178
Number of sequences better than 1.0e-20: 1
length of query: 1143
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1127
effective length of database: 10,329,639
effective search space: 11641503153
effective search space used: 11641503153
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)