BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE03RM1.SCF screened BAC_end
(1023 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1205 989 0.0
>3x_Contig1205
Length = 5507
Score = 989 bits (499), Expect = 0.0
Identities = 541/550 (98%), Gaps = 4/550 (0%)
Strand = Plus / Minus
Query: 75 aagcttcccaaaacctaattgtgtggtcgtatccagcactcgctagaataacagacatgg 134
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 aagcttcccagaacctaattgtgtggtcgtatccagcactcgctagaataacagacatgg 3505
Query: 135 caatattgaagttagtctgaccgtacacaataagaaacctctac-cttgttcacagggga 193
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3504 caatattgaagttagtctgaccgtacacaataagaaacctctacgcttgttcacagggga 3445
Query: 194 gaaaaagccttgaaaactcctcagattccttaagactttctttcatctagtatattgcat 253
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3444 gaaaaagccttgaaaactcctcagattccttaagactntctttcatctagtatattgcat 3385
Query: 254 attctttatcacattaaaccataatttgtcaatattcatgattgagatataaacaacagc 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 attctttatcacattaaaccataatttgtcaatattcatgattgagatataaacaacagc 3325
Query: 314 aattgaaacaaaagtggaggcatagagatagccacaagattgtgtagtggctaatgtcat 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 aattgaaacaaaagtggaggcatagagatagccacaagattgtgtagtggctaatgtcat 3265
Query: 374 tgaatgacacctgatttgcggctttgtgatgacagatttgtattggtgggaaacttctat 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 tgaatgacacctgatttgcggctttgtgatgacagatttgtattggtgggaaacttctat 3205
Query: 434 atcacgtgattgtcacatgaatctcgcgtgcttaaagcattcatgtttttttacttctag 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 atcacgtgattgtcacatgaatctcgcgtgcttaaagcattcatgtttttttacttctag 3145
Query: 494 aaggttccagggtatactctgaaagaacatgatcggttgcaacagaactgaacctgcata 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3144 aaggttccagggtatactctgaaagaacatgatcggttgcaacagaactgaacctgaata 3085
Query: 554 tataggaatgaaatgttatattaaaggtttccaaagaacaagatgttttttcgttcaaaa 613
|||||||||||||||||||| ||||||||| ||||||||| |||| |||||||||| |||
Sbjct: 3084 tataggaatgaaatgttata-taaaggttttcaaagaacaggatg-tttttcgttc-aaa 3028
Query: 614 gattattggt 623
||||||||||
Sbjct: 3027 gattattggt 3018
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7872
Number of Sequences: 1807
Number of extensions: 7872
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)