BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE04FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1441 1298 0.0
>3x_Contig1441
Length = 8574
Score = 1298 bits (655), Expect = 0.0
Identities = 697/707 (98%), Gaps = 3/707 (0%)
Strand = Plus / Minus
Query: 87 atcttttctccaagccctctgtcagcaatcacattagcaggcagatctctgaagaaaaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6040 atcttttctccaagccctctgtcagcaatcacattagcaggcagatctctgaagaaaaca 5981
Query: 147 cttaataaacctagtatactttgtgtttgttctaggttgtcagatagaatgtacctatca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5980 cttaataaacctagtatactttgtgtttgttctaggttgtcagatagaatgtacctatca 5921
Query: 207 gcagcattaaaaatttcatcaatgactgatgtccttgctgaatctgtaagaaaaggcaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5920 gcagcattaaaaatttcatcaatgactgatgtccttgctgaatctgtaagaaaaggcaga 5861
Query: 267 gtttggttatggaccaagttaaacaactcgatatcttcaatagaaatcactataccacaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5860 gtttggttatggaccaagttaaacaactcgatatcttcaatagaaatcactataccacaa 5801
Query: 327 cgacataagcattcgacaaaacattgaaagagacttaggtacttatcacccatcaaaaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5800 cgacataagcattcgacaaaacattgaaagagacttaggtacttatcacccatcaaaaac 5741
Query: 387 tttgtattccgggtgaagttaacaaacataaattgatgtaatgattccagaatcgcaatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5740 tttgtattccgggtgaagttaacaaacataaattgatgtaatgattccagaatcgcaatc 5681
Query: 447 ctacccgccttaaagtttagagaacaaaacaaattaccataaaattcacaagcgacttta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5680 ctacccgccttaaagtttagagaacaaaacaaattaccataaaattcacaagcgacttta 5621
Query: 507 ggctccatcaagtccacggaaacatagtagcctaatattttagccaacgattctgcgata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 ggctccatcaagtccacggaaacatagtagcctaatattttagccaacgattctgcgata 5561
Query: 567 gcaatcctccatttgggacacttaacgcagacggtcaaaattgaatttatattcgaacgc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 gcaatcctccatttgggacacttaacgcagacggtcaaaattgaatttatattcgaacgc 5501
Query: 627 ataacgttcaagaagtcattttttgtgagctttgacaaaattattggacttaaagtaacc 686
||||||| |||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct: 5500 ataacgtccaagaagtca-tttttgtgagctttgacaaaataattggactcaaagtaacc 5442
Query: 687 agtcaaattctcaaccaaagatgaaacaaaatcagaggggtaatcaactttttcattaga 746
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 5441 agtcaaattctcaaccaaagatgaaacaaaatcagaggggtaatcaactctttcatcaga 5382
Query: 747 aatattag-aaatacattccttacccagttttaaatatttctgatga 792
||||| || ||||||| |||||| |||||||||||||||||||||||
Sbjct: 5381 aatatcagaaaataca-tccttaaccagttttaaatatttctgatga 5336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7140
Number of Sequences: 1807
Number of extensions: 7140
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)