BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE04RM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig468 890 0.0
3x_Contig459 418 e-117
>3x_Contig468
Length = 2584
Score = 890 bits (449), Expect = 0.0
Identities = 492/501 (98%), Gaps = 4/501 (0%)
Strand = Plus / Minus
Query: 45 tgcattgcattcttttgaaagggttaaaatataatcgcatagagctacaattgattgatc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcattgcattcttttgaaagggttaaaatataatcgcatagagctacaattgattgatc 440
Query: 105 tgatctcaaaggatcacagcccgttttcaaacatgaagcaattcgttgaaacttaccaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgatctcaaaggatcacagcccgttttcaaacatgaagcaattcgttgaaacttaccaaa 380
Query: 165 cgtcacagaatttgtatccaccatcattaaatctatgttcttggagttttttgcatttgg 224
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 379 cgtcacagaatttgtatccaccatcattaaatctatgttcttggagtttaatgcatttgg 320
Query: 225 agatt-catacacataatcataaatagaaatttcatgatttgaaggtttgaaatgtactt 283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agatttcatacacataatcataaatagaaatttcatgatttgaaggtttgaaatgtactt 260
Query: 284 tcatggctggttcatttggaggcgtttctgggctatcattgtcaatcgtttgaacttttg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcatggctggttcatttggaggcgtttctgggctatcattgtcaatcgtttgaacttttg 200
Query: 344 attttatgattcttgaagcttcacgcaaagaatccatgtcagtagtatccgagtcactcg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attttatgattcttgaagcttcacgcaaagaatccatgtcagtagtatccgagtcactcg 140
Query: 404 tttcaataggatcat-cttttttggtggggctggcactattatcaacaacattttcaaag 462
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 139 tttcaataggatcatgcttttttggtggggctggcactattatcaacaaca-tttcaaag 81
Query: 463 gaatcttgtaacatcgcttctaacctatcattagctgaaagaagaagtttttcctccggc 522
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 80 gaatcttgtaacatcgcttctaacctatcattagctgaaagaagaagttatatctccggc 21
Query: 523 gaaatagcttcgtcaaaaaga 543
|||||||| ||||||||||||
Sbjct: 20 gaaatagc-tcgtcaaaaaga 1
>3x_Contig459
Length = 1510
Score = 418 bits (211), Expect = e-117
Identities = 227/231 (98%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 631 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 60
Query: 691 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 120
Query: 751 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctggcctggttcttata 810
||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct: 121 atgttgctgaacccgtgaataccatgagaaacgggcttatcagct-gtctggttctcata 179
Query: 811 atcattatcggaagacgaagtagaattatctttctttatggagtattcaga 861
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 180 atcattatcggaagacgaagtagaattatcttcctttatggagtattcaga 230
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7304
Number of Sequences: 1807
Number of extensions: 7304
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)