BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE05FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1356 1164 0.0
>3x_Contig1356
Length = 8043
Score = 1164 bits (587), Expect = 0.0
Identities = 628/639 (98%), Gaps = 2/639 (0%)
Strand = Plus / Minus
Query: 86 ctcagggctcaaaattacttatcaagaggtttttatctatacttgacgtgttgctgagcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctcagggctcaaaattacttatcaagaggtttttatctatacttgacgtgttgctgagcc 582
Query: 146 gcacagaatatgtgtccataaaagatgacgttttatggcgcttataccaaattgaagacc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gcacagaatatgtgtccataaaagatgacgttttatggcgcttataccaaattgaagacc 522
Query: 206 catcttctaagattattatattagaaatcattgccaaattttataatgagaaaaacgaac 265
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 catcttctaagatcaagatattagaaatcattgccaaattttataatgagaaaaacgaac 462
Query: 266 aagtcattgacactgtgcaacaagacatgaagacagtgcaaaaatgggtgaatgaattaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aagtcattgacactgtgcaacaagacatgaagacagtgcaaaaatgggtgaatgaattaa 402
Query: 326 caacaataatacaaacaccagaactagatgaacttcatctcagatccttcttccattgca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 caacaataatacaaacaccagaactagatgaacttcatctcagatccttcttccattgca 342
Query: 386 tcagtttcataaagacacgtttcaaaaaccgtgtcaaaatagattctgatttcttgaatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcagtttcataaagacacgtttcaaaaaccgtgtcaaaatagattctgatttcttgaatt 282
Query: 446 ggttaatcgatgagattgaagtgcgcaatgaaaaatcgaaagatgatatttataaaagag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggttaatcgatgagattgaagtgcgcaatgaaaaatcgaaagatgatatttataaaagag 222
Query: 506 atgtggatcaactggaatttgataatcagttagccaaaagcagacatgcagttttcggta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgtggatcaactggaatttgataatcagttagccaaaagcagacatgcagttttcggta 162
Query: 566 acccaaatgctgccagactaaaagagagactctttgacgatgatgacacttttatagccg 625
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 161 acccaaatgctgccagactaaaagagagactctttgacgatgatgacactttaatagccg 102
Query: 626 atgagctatgagtgattgacagcgaaatacataaattggcatttcgttattatgatggaa 685
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct: 101 atgagctatgagtgattgacagcgaaatacataaattggcattacgttatta-gatagaa 43
Query: 686 tttaattgggaaaagtcttatgtattttatttaaataac 724
||||| | ||||||||| |||||| ||||||||||||||
Sbjct: 42 tttaaattggaaaagtc-tatgtaatttatttaaataac 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7753
Number of Sequences: 1807
Number of extensions: 7753
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)