BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE05RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1189 0.0
>3x_Contig1451
Length = 8346
Score = 1189 bits (600), Expect = 0.0
Identities = 634/640 (99%), Gaps = 4/640 (0%)
Strand = Plus / Plus
Query: 41 gcttcggctacaggnggccgatgaggatgatgattcaaaacgggaacaagccatagtacg 100
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gcttcggctacagg-ggccgatgaggatgatgattcaaaacgggaacaagccatagtacg 725
Query: 101 aaaagaacgggctgatattgacgatgaggatgctgagggttccgacagttttgaggatca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aaaagaacgggctgatattgacgatgaggatgctgagggttccgacagttttgaggatca 785
Query: 161 agcggatgaagtacttcaaaatatatcagaaagacaaaagagacttgctaacaaaccaag 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agcggatgaagtacttcaaaatatatcagaaagacaaaagagacttgctaacaaaccaag 845
Query: 221 tattgctgttttgaaagcttcagtaccatatccggaactcatcgaatggtttga-ctgcg 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 846 tattgctgttttgaaagcttcagtaccatatccggaactcatcgaatggtttgagctgcg 905
Query: 280 atgcgcaatggccttatttcaatgcagctataaagacaacacataatacagtggggatcc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 atgcgcaatggccttatttcaatgcagctataaagacaacacataatacagtggggatcc 965
Query: 340 ccagacattggcaaatgaaaa-gaggttatttatctggacgatcaatgatggaaaggaag 398
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 966 ccagacattggcaaatgaaaaagaggttatttatctggacgatcaatgatggaaagga-g 1024
Query: 399 ccatttcaattacctgagattattagacaaaccgatattgaaacgatgcgagagactgtt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 ccatttcaattacctgagattattagacaaaccgatattgaaacgatgcgagagactgtt 1084
Query: 459 ccctctggaaacgaaaagcaagcagagaaattgaaggatattaccagagcaaaagttcaa 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 ccctctggaaacgaaaagcaagcagagaaattgaaggatattaccagagcaaaagttcaa 1144
Query: 519 cccaagctaggtgtattagatctagattataaaaggttgtacgaagcatttttcactttg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 cccaagctaggtgtattagatctagattataaaaggttgtacgaagcatttttcactttg 1204
Query: 579 ggaaagaattggaaacctgaactattgtcatttggtgatttatattatgaaaacagaagt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 ggaaagaattggaaacctgaactattgtcatttggtgatttatattatgaaaacagaagt 1264
Query: 639 ttggatagtgaactccaatggaaacatataaagacacgat 678
||||||||||||||| |||||||||| |||||||||||||
Sbjct: 1265 ttggatagtgaactcgaatggaaacaaataaagacacgat 1304
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7230
Number of Sequences: 1807
Number of extensions: 7230
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)