BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE06FM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1119 910 0.0
>3x_Contig1119
Length = 5045
Score = 910 bits (459), Expect = 0.0
Identities = 514/531 (96%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 114 cactgaagaagacaaatactcagtcaagagtcctaagttaccttgatttgataataactc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4359 cactgaagaagacaaatactcagtcaagagtcctaagttaccttgatttgataataactc 4300
Query: 174 taggtgttcacattgcgaccaaagcataccaatcgaaatgagtctttctttcaaaaattt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4299 taggtgttcacattgcgaccaaagcataccaatcgaaatgagtctttctttcaaaaattt 4240
Query: 234 ggcaagtttttttttctcggcaataattggatctttaaagtcttttgcatctgagttaac 293
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4239 ggcaagtttctcatcctcggcaataattggatctttaaagtcttttgcatctgagttaac 4180
Query: 294 tatttcaactagttcatctgataatttgtgaatgctctgaactaaagaaacaatatcatt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4179 tatttcaactagttcatctgataatttgtgaatgctctgaactaaagaaacaatatcatt 4120
Query: 354 atccaatttgttgataaagtagtctgcgaagtgtgagtcatgaaataacggcaccaatga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4119 atccaatttgttgataaagtagtctgcgaagtgtgagtcatgaaataacggcaccaatga 4060
Query: 414 aagtaaatagaatacaacattcatcaactctaccatttgcgtcttgaaagcatcttcatt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4059 aagtaaatagaatacaacattcatcaactctaccatttgcgtcttgaaagcatcttcatt 4000
Query: 474 atttgaaatcttatctggagttgagataatccctaatttggttgcattggacttgattag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3999 atttgaaatcttatctggagttgagataatccctaatttggttgcattggacttgattag 3940
Query: 534 ctttgaaagtttgcccagttctttcagtaaagacgaagcatggtattcgggcttcttaag 593
||||||||||||||||||||||| |||||||||||||||| | ||| || ||||||| |
Sbjct: 3939 ctttgaaagtttgcccagttcttccagtaaagacgaagcaggtaatttggtcttcttagg 3880
Query: 594 tatttcatgcaactaattccacataagtatatgggaattctggtttaaaac 644
|||| |||||||| |||||||| |||||||||||||||||| ||| ||||
Sbjct: 3879 tattccatgcaac-gattccacagaagtatatgggaattctgttttcaaac 3830
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7931
Number of Sequences: 1807
Number of extensions: 7931
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)