BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE06RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1096 0.0
>3x_Contig1663
Length = 13533
Score = 1096 bits (553), Expect = 0.0
Identities = 629/649 (96%), Gaps = 4/649 (0%)
Strand = Plus / Plus
Query: 79 tgctttcaaatactgcatctacattcctccaagatcaaccactttttgaatccatcaaat 138
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3789 tgctttcaaatactgcatc-acattcctccaagatcaaccactttttgaatccatcaaat 3847
Query: 139 tcgaactccaagatcaatgacctaccgaacatcttacgcttttgtgaagtttgttcgtaa 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3848 tcgaactccaagatcaatgacctaccgaacatcttacgcttttgtgaagtttgttcgtaa 3907
Query: 199 gatagagtcgaaagccaggcccaaataaaataatcatctatatcaacacgactgatacta 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 gatagagtcgaaagccaggcccaaataaaataatcatctatatcaacacgactgatacta 3967
Query: 259 attgactcttctatcaaatcgggatttgaggagggcagattccttcctttactccaacca 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3968 attgactcttctatcaaatcgggatttgaggagggcagattccttcctttactccaacca 4027
Query: 319 gcttggaaagtagaatgcttagtagacatgcatttcatcaaccgttttgattcttttgac 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4028 gcttggaaagtagaatgcttagtagacatgcatttcatcaaccgttttgattcttttgac 4087
Query: 379 atcttactgcttatcccctcaatgttctttttcttcttgaacagcgacttcaataaggcg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4088 atcttactgcttatcccctcaatgttctttttcttcttgaacagcgacttcaataaggcg 4147
Query: 439 aagtcttctcgagtttcgaacttttctggttcatcaaaatccatgagctcattgcaacgt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4148 aagtcttctcgagtttcgaacttttctggttcatcaaaatccatgagctcattgcaacgt 4207
Query: 499 tcaatcaattgccacggttttcctagtaaactttgtggtcatgagagttacaataggaac 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4208 tcaatcaattgccacgg-tttcctagtaaactttgtggtcatgagagttacaataggaac 4266
Query: 559 agttaggatagttttagaggttaatgtgtcagaatttttatgaggataagcattgttcaa 618
||| |||||||||| |||||| |||||||||||||| ||| ||||||||||||||| ||
Sbjct: 4267 agtaaggatagtttcagaggtaaatgtgtcagaattcttaggaggataagcattgtcgaa 4326
Query: 619 ttgaatgtttcttaaacttttcggtaattttacctttgtaaaatccgttggtacgaatga 678
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4327 tagaatgtttcttaaacttttcggtaattttacctttgtagaatccgttggtacgaatga 4386
Query: 679 tccttatg-aagcccattaccaatgaaacatatctttatctgccggaat 726
| |||||| ||||| || || ||||||||||| | | | ||||||||||
Sbjct: 4387 t-cttatgaaagccaataacaaatgaaacatagcctcagctgccggaat 4434
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8165
Number of Sequences: 1807
Number of extensions: 8165
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)