BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE07FM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1117 1350 0.0
>3x_Contig1117
Length = 4940
Score = 1350 bits (681), Expect = 0.0
Identities = 740/753 (98%), Gaps = 5/753 (0%)
Strand = Plus / Plus
Query: 87 agcgggatggttgaacaatggagagaaatgcaagtcagtgattctggaagtatttcttct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 agcgggatggttgaacaatggagagaaatgcaagtcagtgattctggaagtatttcttct 1816
Query: 147 catgacagtaacaccgggatgctagactctccagagagtctaacgtctagtcctgataag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 catgacagtaacaccgggatgctagactctccagagagtctaacgtctagtcctgataag 1876
Query: 207 aaggaccattttttttattcaagtcattcgacatcaataagtagttcttcatcctcttct 266
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 aaggaccattattctcattcaagtcattcgacatcaataagtagttcttcatcctcttct 1936
Query: 267 tctccttcgaatctaccgcatggaatggtaactgacaatggtatgcttgacgaagataac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 tctccttcgaatctaccgcatggaatggtaactgacaatggtatgcttgacgaagataac 1996
Query: 327 aattctttgaattacatcttgggacaacagaattaccaactatcatctactcctgtggta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 aattctttgaattacatcttgggacaacagaattaccaactatcatctactcctgtggta 2056
Query: 387 aagctcgaagaagaccattcgatgcttttagaaaataatggcgatgctgatctaaacgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 aagctcgaagaagaccattcgatgcttttagaaaataatggcgatgctgatctaaacgat 2116
Query: 447 gtgggaatttccttcatcgctgaagatggtaccaacagcgacaacaaaaatatagatatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 gtgggaatttccttcatcgctgaagatggtaccaacagcgacaacaaaaatatagatatg 2176
Query: 507 agaaaccaggaaactggcgaaggttggaacctcttgttgacggtacctcctgaactaaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 agaaaccaggaaactggcgaaggttggaacctcttgttgacggtacctcctgaactaaac 2236
Query: 567 tccgacttgtctgaacttgaaccatcagatataataagtccaatcggccttgacacatgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 tccgacttgtctgaacttgaaccatcagatataataagtccaatcggccttgacacatgg 2296
Query: 627 cgcaatccagcagtgattgtaacatgaaaagtatacgatactcagcatataccaggacac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 cgcaatccagcagtgattgtaacatgaaaagtatacgatactcagcatataccaggacac 2356
Query: 687 agacacttatgcgaaagaagagaagagacctgatcaccacgttgtatccagtcaattatt 746
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 2357 agacacttatgcgaaagaagagaagagacatgatcaccacgttgtatccagtcaataatc 2416
Query: 747 agtcaaattctagccgtcttaacaactaatacaagctccctttattcctctcctcatttc 806
||||||| |||||||||| | ||| |||||||||||| ||||||||||||| ||||||||
Sbjct: 2417 agtcaaa-tctagccgtc-tcacagctaatacaagct-cctttattcctct-ctcatttc 2472
Query: 807 tcttcctttcccagtttgcccttttcaagggtc 839
|||| ||||||||||||||||||||||||||||
Sbjct: 2473 tctt-ctttcccagtttgcccttttcaagggtc 2504
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6831
Number of Sequences: 1807
Number of extensions: 6831
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)