BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE08FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1423 1086 0.0
>3x_Contig1423
Length = 8454
Score = 1086 bits (548), Expect = 0.0
Identities = 632/655 (96%), Gaps = 4/655 (0%)
Strand = Plus / Plus
Query: 86 caattgctaaaatgaaagccttgattgaaaattttgactacgagtccatcgtagcgatac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caattgctaaaatgaaagccttgattgaaaattttgactacgagtccatcgtagcgatac 256
Query: 146 aaaaagaatgccaagtcattagagagttcactaataagattagaatgagaatgattaaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaaaagaatgccaagtcattagagagttcactaataagattagaatgagaatgattaaac 316
Query: 206 atgattgcattgtctttcaaaataatagtgacatttacataaatgaaattattccaccga 265
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atgattgcattgacatccaaaataatagtgacatttacataaatgaaattattccaccga 376
Query: 266 catggtttgaattcaaaagggaaggtccaaagtattgcgttcattgcgagtgtgtggaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catggtttgaattcaaaagggaaggtccaaagtattgcgttcattgcgagtgtgtggaga 436
Query: 326 ctattgaatggcgtaacggtccgtggggtaaagcgactttgtgtaatgcatgtggtttgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctattgaatggcgtaacggtccgtggggtaaagcgactttgtgtaatgcatgtggtttgt 496
Query: 386 ggtatcgcaaattgaagaaaaaatttaccgcagaacaatcagcaataataatggaggaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggtatcgcaaattgaagaaaaaatttaccgcagaacaatcagcaataataatggaggaga 556
Query: 446 aaagactcttttccaataaacatgataggaaagagttttctaaatttgatgcagatgata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaagactcttttccaataaacatgataggaaagagttttctaaatttgatgcagatgata 616
Query: 506 aaagactaaagatcattaaggactcattgattgaccggataaacaaaatcataaaggagg 565
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 617 aaagactaaagatcattaaggactcattgattgaccggataaacaaattcataaaggagg 676
Query: 566 tagagttatgcaagagtactgctgccaagcttaagcaaataaaagcaaaagaggatttgg 625
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 677 tagagttatgcaagagtactgctgccaagctaaagcaaataaaagcaaaagaggatatgg 736
Query: 626 atcagnaagtgacacccttgggaaataaacaagt-ccattcaaattctcggattttgttg 684
||||| |||||||| ||| ||||||||||||||| | |||||| |||||| | | |||||
Sbjct: 737 atcagaaagtgaca-cctcgggaaataaacaagtacgattcaatttctcgta-tatgttg 794
Query: 685 aatgaacagttaacctgacttcaaaataaaatggattggaaagggttatttcatt 739
||||| ||||| | ||||||||||||| | || ||||||||||| |||| |||||
Sbjct: 795 aatgagcagtttagctgacttcaaaat-agattgattggaaaggtttatatcatt 848
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9572
Number of Sequences: 1807
Number of extensions: 9572
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)