BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZE08RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1785                                                         870   0.0  

>3x_Contig1785 
          Length = 37935

 Score =  870 bits (439), Expect = 0.0
 Identities = 506/523 (96%), Gaps = 4/523 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   gcttcagacagctttactcgaaatgtaaactatattaaacatgtacactactcaatttac 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2925 gcttcagacagctttactcgaaatgtaaactatattaaacatgtacactactcaatttac 2984

                                                                        
Query: 105  acgttttagatgtattctaatgccagcttcggactttagaatcaaatgcttaaactgcca 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2985 acgttttagatgtattctaatgccagcttcggactttagaatcaaatgcttaaactgcca 3044

                                                                        
Query: 165  tatatgaatgagatcacgtgcgttgcatccgaaagactgtaaactaggattccctgagca 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3045 tatatgaatgagatcacgtgcgttgcatccgaaagactgtaaactaggattccctgagca 3104

                                                                        
Query: 225  gacagttatttcattactcttatagagtgcaaatgattaatatattacccgatcaacatg 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3105 gacagttatttcattactcttatagagtgcaaatgattaatatattacccgatcaacatg 3164

                                                                        
Query: 285  agcacatcacttaacacgaagaacacaactaactacgtattcaagataagtatctccgta 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165 agcacatcacttaacacgaagaacacaactaactacgtattcaagataagtatctccgta 3224

                                                                        
Query: 345  ttttctccggcccgtttagcagcatgtctgggattatactgacagaaaattcagtttttc 404
            |||||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||
Sbjct: 3225 ttttctccggcccgtttagcagcatgtctggattaatactgacagaaatttcagtttttc 3284

                                                                        
Query: 405  gaaagagaaatctcatgaaaaag-aaaaaaaaagctgcgaccatggcaatcagagggaaa 463
            ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 3285 gaaagagaaatctcatgaaaatgaaaaaaaaaagctgcgaccatggcaatcagagggaaa 3344

                                                                        
Query: 464  aaatggaatgatggataaggaaaattgataatgaaagttggaggattgaaaatcattatt 523
            |||| |||||||||||||||||||||||||||||||||| || |||||||||||| || |
Sbjct: 3345 aaatagaatgatggataaggaaaattgataatgaaagtt-gaagattgaaaatcaataat 3403

                                                       
Query: 524  gggaaattttggcccttttgagggccagttaagttgcgattag 566
             ||| ||||||| ||||||||| || |||| ||||||||||||
Sbjct: 3404 tggagattttgg-ccttttgagtgcaagtt-agttgcgattag 3444


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8107
Number of Sequences: 1807
Number of extensions: 8107
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)