BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE09FM1.SCF screened BAC_end
(1030 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 626 e-179
>3x_Contig343
Length = 1398
Score = 626 bits (316), Expect = e-179
Identities = 384/404 (95%), Gaps = 2/404 (0%)
Strand = Plus / Minus
Query: 112 ttatccccgtacgctctgcatcccaaaatatcttgtatcggaataactttctcggcaacc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttatccccgtacgctctgcatcccaaaatatcttgtatcggaataactttctcggcaacc 663
Query: 172 ctctcagactcatccttataataactgaattgcgtcttccttaagacgcaccagtacttg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctctcagactcatccttataataactgaattgcgtcttccttaagacgcaccagtacttg 603
Query: 232 tgattgtatttttttttcttgacactccaattagtccagttctttgccaattgtttcgtg 291
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgattgtatttcgtcttcttgacactccaattagtccagttctttgccaattgtttcgtg 543
Query: 292 gatgaaatagacttcgagacggtgggtttttttacaagatatgacgaataaataatccat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 542 gatgaaatagacttcgagacggtgggtttttttacaagatatgacgaataaataatctct 483
Query: 352 tcattatcttcgaaggtttgttgccccatttcttcttgcagagacaactgtctagtacta 411
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcattatcttcgaaggtttgttgtcccatttcttcttgcagagacaactgtctagtacta 423
Query: 412 tgatattggattcgccgctttcccttgaaaaaaagaagatttccaggcggaacaatcggc 471
|||||||| ||||||| ||| ||||| ||||| || ||||||||||||| || ||||||
Sbjct: 422 tgatattgatttcgccg-ttttccttgtaaaaatgatgatttccaggcggcacgatcggc 364
Query: 472 cattggtcattggaattttttgtccgtttttgttaaatcgttta 515
|| ||||||||| ||||| |||| |||||||||| |||||||||
Sbjct: 363 cagtggtcattgtaatttgttgt-cgtttttgtttaatcgttta 321
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8591
Number of Sequences: 1807
Number of extensions: 8591
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 1030
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1014
effective length of database: 10,329,639
effective search space: 10474253946
effective search space used: 10474253946
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)