BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE10RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1394 1116 0.0
>3x_Contig1394
Length = 5721
Score = 1116 bits (563), Expect = 0.0
Identities = 642/659 (97%), Gaps = 7/659 (1%)
Strand = Plus / Minus
Query: 35 gctttaccgttcca-cactgacgaaaagtacttgtgtacttggggtattgacagtgccta 93
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gctttaccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgccta 801
Query: 94 cgtcgttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactga 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cgtcgttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactga 741
Query: 154 aaacatggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcga 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaacatggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcga 681
Query: 214 ccaggatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaa 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccaggatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaa 621
Query: 274 tgctggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaa 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgctggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaa 561
Query: 334 ctgggctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgat 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgggctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgat 501
Query: 394 tccaaacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacgg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tccaaacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacgg 441
Query: 454 tggtagcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatgg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggtagcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatgg 381
Query: 514 ttgtaccgtttcagtgacttctggtgctgctaaattcgttttatacgaataatgactctt 573
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 380 ttgtaccgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactctt 321
Query: 574 ttcagaagcattggcggggatgttatttaccggtgctggtttttcttttcttccctaacc 633
|||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||| |
Sbjct: 320 ttcagaggcattggc-gggatgttatttaccgttgct-gtttttcttttcttccctagtc 263
Query: 634 tgctattctgaaaccttttgaatctgtccaaaaatggaaatgtgaactaacatcattaa 692
||||| |||||| || | || |||||| ||||||| |||||| ||||||||||||||||
Sbjct: 262 tgcta-tctgaatcc-tctgtatctgt-caaaaattgaaatg-gaactaacatcattaa 208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6479
Number of Sequences: 1807
Number of extensions: 6479
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)