BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE11FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1039 902 0.0
>3x_Contig1039
Length = 4866
Score = 902 bits (455), Expect = 0.0
Identities = 480/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 88 taaaaacggtgcgttttggtgccagtttttgaattaaacggacacaaattgcaaaaactc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3210 taaaaacggtgcgttttggtgccagtttttgaattaaacggacacaaattgcaaaaactc 3269
Query: 148 atacatcctaacaaaaagaaaatgagtattttattcataacgttagatatggcgacacat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3270 atacatcctaacaaaaagaaaatgagtattttattcataacgttagatatggcgacacat 3329
Query: 208 atcgtcactttgtggattccattggtcttaacactgtccacgatatttgaaataaatatc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3330 atcgtcactttgtggattccattggtcttaacactgtccacgatatttgaaataaatatc 3389
Query: 268 atatacaaaagaacgataaagggttattatgagactcaagaattcagataccaaggcgag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3390 atatacaaaagaacgataaagggttattatgagactcaagaattcagataccaaggcgag 3449
Query: 328 aaggttatagataccgaagaagaattggcaaaatttcataaaggaatgcatagggtatta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 aaggttatagataccgaagaagaattggcaaaatttcataaaggaatgcatagggtatta 3509
Query: 388 caaaaaaatatatcgttacataggtttgggttgaaaagattacatttatgtgagttttgg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 caaaaaaatatatcgttacataggtttgggttgaaaagattacatttatgtgagttttgg 3569
Query: 448 tgtatttattggatgttgacattcgcaataaacgaggaaatagcaccattcgtgcagcat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3570 tgtatttattggatgttgacattcgcaataaacgaggaaatagcaccattcgtgcagcat 3629
Query: 508 attggtatacccgaagttatcattaagggactttaaattttggcccccatttgcgttgta 567
||||||||||| ||||||||||||||| || ||||||||| | ||||||||||||||||
Sbjct: 3630 attggtataccgaaagttatcattaaggtac-ttaaatttttggccccatttgcgttgta 3688
Query: 568 tggttac 574
|| ||||
Sbjct: 3689 tgtttac 3695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7823
Number of Sequences: 1807
Number of extensions: 7823
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)