BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZE11RM1.SCF screened BAC_end
         (915 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1707                                                        1078   0.0  

>3x_Contig1707 
          Length = 16216

 Score = 1078 bits (544), Expect = 0.0
 Identities = 619/640 (96%), Gaps = 3/640 (0%)
 Strand = Plus / Plus

                                                                        
Query: 42   tccactcaacctcattgtactttttttctccagtttgcattgtagaagcagtgaaattga 101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4529 tccactcaacctcattgtactttttttctccagtttgcattgtagaagcagtgaaattga 4588

                                                                        
Query: 102  tcaattgtcaaggatccctagtcgtcttccttaagacatgcctcccggggaacttatatt 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4589 tcaattgtcaaggatccctagtcgtcttccttaagacatgcctcccggggaacttatatt 4648

                                                                        
Query: 162  ttctaacctaaggtcaggatcaaggcctgttccaagggacagggatgccctgtcatcagt 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4649 ttctaacctaaggtcaggatcaaggcctgttccaagggacagggatgccctgtcatcagt 4708

                                                                        
Query: 222  gcaaagcgatgccatcagcaccaaatcttctgcaaggtataactttcaaggtaccggttc 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4709 gcaaagcgatgccatcagcaccaaatcttctgcaaggtataactttcaaggtaccggttc 4768

                                                                        
Query: 282  atctgatgcaacttctggtacgaatgttacaattagaaataatactttgagtatcggcgt 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4769 atctgatgcaacttctggtacgaatgttacaattagaaataatactttgagtatcggcgt 4828

                                                                        
Query: 342  cagctctcaaatgcaaggatctgcgttcaacggccctcggatgcagttatcgaccaatgg 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4829 cagctctcaaatgcaaggatctgcgttcaacggccctcggatgcagttatcgaccaatgg 4888

                                                                        
Query: 402  tttgaaaaatactcaatctaaagccctgcaggcgcaatcacaagatggttgtcaggatag 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4889 tttgaaaaatactcaatctaaagccctgcaggcgcaatcacaagatggttgtcaggatag 4948

                                                                        
Query: 462  caagaatattgcggataatgatagtgacgcagaagcgagaacagctaaaagatccctcga 521
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4949 taagaatattgcggataatgatagtgacgcagaagcgagaacagctaaaagatccctcga 5008

                                                                        
Query: 522  gttggaacttgctttttatgaagcaaggtttttcgaatgaacaagttatggtttacatat 581
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 5009 gttggaacttgcttttcatgaagcaagg-ttttcgaatgaacaagttatggttgacatat 5067

                                                                        
Query: 582  tattctctaagggtgccaaaaaaaggggatctggcctgaactaaaaacttacagaacttt 641
             || |  |||||||||| ||| |||| ||||||| |||||||||||||||||||||||| 
Sbjct: 5068 catccattaagggtgcc-aaagaaggtgatctgg-ctgaactaaaaacttacagaacttc 5125

                                                    
Query: 642  ttccggattcaaaaatacaaagctttattttatattgaaa 681
            | |||||| |||| ||| |||| | ||||| ||| |||||
Sbjct: 5126 tcccggatccaaagataaaaagttatatttcatagtgaaa 5165


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7344
Number of Sequences: 1807
Number of extensions: 7344
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)