BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE12FM1.SCF screened BAC_end
(1038 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 751 0.0
>3x_Contig1791
Length = 39945
Score = 751 bits (379), Expect = 0.0
Identities = 456/478 (95%), Gaps = 3/478 (0%)
Strand = Plus / Minus
Query: 119 gcaaactgctcgatcaacgacacattacaccagtacttcaaatcaatctcgatatcatca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21271 gcaaactgctcgatcaacgacacattacaccagtacttcaaatcaatctcgatatcatca 21212
Query: 179 tgtttacggcgaaggcttttggactcttttctgcatgtaggacacttaaaatcgttcgaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21211 tgtttacggcgaaggcttttggactcttttctgcatgtaggacacttaaaatcgttcgaa 21152
Query: 239 tataagtgccacttcctaatacaagaaacatgatatctatgctcacagggtaaaagctcc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21151 tataagtgccacttcctaatacaagaaacatgatatctatgctcacagggtaaaagctcc 21092
Query: 299 ccttgatcagtttcattcatagattccaaacaaataccacatatttcaatcatcttgtga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21091 ccttgatcagtttcattcatagattccaaacaaataccacatatttcaatcatcttgtga 21032
Query: 359 tatataatgtagttgctcggagggtcatataatatgaacggtttccaaacctacttttct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21031 tatataatgtagttgctcggagggtcatataatatgaacggtttccaaacctacttttct 20972
Query: 419 ttcgttttttggcctatcctgtatatcagatcctgttnaaattaacggctgccacttaaa 478
| ||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||||
Sbjct: 20971 tcgtttttttggcctatcctgtagatcagttcctgtttaaatcaacggctgccacttaag 20912
Query: 479 cccatcttctataaaattgtaccttagatttcaaaacttaaaagaaccccacatattaaa 538
||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct: 20911 cccatcttctataaaattgtaccttagatatcaaaac-taaaagaa-cccacatattaaa 20854
Query: 539 acatacaccagataccttattgtttttccccatccacccgtcagttcttataaatcta 596
||| | | |||| | || | ||||||||||||| || ||||||| |||||| ||||||
Sbjct: 20853 acaaagaacagaaaactaagtgtttttccccataca-ccgtcaggtcttattaatcta 20797
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8736
Number of Sequences: 1807
Number of extensions: 8736
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 1038
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1022
effective length of database: 10,329,639
effective search space: 10556891058
effective search space used: 10556891058
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)