BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZE12RM1.SCF screened BAC_end
(1259 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1219 710 0.0
>3x_Contig1219
Length = 5018
Score = 710 bits (358), Expect = 0.0
Identities = 402/410 (98%), Gaps = 5/410 (1%)
Strand = Plus / Minus
Query: 72 caagctttatactggtttagaatggctaccaaggagatcgaaatcccacgagacgataag 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4832 caagctttatactggtttagaatggctaccaaggagatcgaaatcccacgagacgataag 4773
Query: 132 gctcatgtagaactggaatcagtatcgccacaagcgatggttgagttgggtaagatttac 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4772 gctcatgtagaactggaatcagtatcgccacaagcgatggttgagttgggtaagatttac 4713
Query: 192 ggatttgaagagttagacgaatccgttagacaagagcttctgagaaacggaatcactcaa 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4712 ggatttgaagagttagacgaatccgttagacaagagcttctgagaaacggaatcactcaa 4653
Query: 252 tataaggaaaaatcgatcaaatactattatagatgcgcccatgacttcgattattctcaa 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4652 gataaggaaaaatcgatcaaatactattatagatgcgcccatgacttcgattattctcaa 4593
Query: 312 gcccaatacaaattgggtcattttttatgaatttggggagatgggactacctgtaatacc 371
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4592 gcccaatacaaattgggtca-tttttatgaatttggggagatgggactacctgtaatacc 4534
Query: 372 caagaagtccattgcatggtacgcaaagagctccatgaacaagaccaaactcaaaccccg 431
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 4533 caagaagtccattgcatggtacgcaaagagttccatgaacaagaccaaac-caaa-cccg 4476
Query: 432 ttagccatggtagcactttattggctggtacctttaccggtgctgagggg 481
|||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct: 4475 ttagccatggtagcac-ttagtggctggtacc-ttaccggtgctgagggg 4428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,114
Number of Sequences: 1807
Number of extensions: 30114
Number of successful extensions: 1195
Number of sequences better than 1.0e-20: 1
length of query: 1259
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1243
effective length of database: 10,329,639
effective search space: 12839741277
effective search space used: 12839741277
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)