BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZF01FM1.SCF screened BAC_end
         (882 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig954                                                         1427   0.0  

>3x_Contig954 
          Length = 3755

 Score = 1427 bits (720), Expect = 0.0
 Identities = 774/788 (98%), Gaps = 3/788 (0%)
 Strand = Plus / Plus

                                                                       
Query: 87  cgcttaccgatgctatctctcccaaaatatacctttcgttcttgaagatcagtaattgcg 146
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 95  cgcttaccgatgctatctctccctatatatacctttcgttcttgaagatcagtaattgcg 154

                                                                       
Query: 147 tacgcaaattctccataacatttccttactacctcttcaacagaatgcttttccaaaagt 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tacgcaaattctccataacatttccttactacctcttcaacagaatgcttttccaaaagt 214

                                                                       
Query: 207 gaagaaatatattccgtatcactgtgttcacaattttcaacagtatcatcattatacagt 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaagaaatatattccgtatcactgtgttcacaattttcaacagtatcatcattatacagt 274

                                                                       
Query: 267 tccccgttatactgtagaaggtaacgatcttgtaccatgacgctttgtttcgtgaatggt 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tccccgttatactgtagaaggtaacgatcttgtaccatgacgctttgtttcgtgaatggt 334

                                                                       
Query: 327 gttcttaaagataatacagatgagaacaacatagcattaatttcagataacgatctcaat 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gttcttaaagataatacagatgagaacaacatagcattaatttcagataacgatctcaat 394

                                                                       
Query: 387 gacgcatagtttggacctcttctcacgatatacggtatcagttcattaaataacgtatta 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gacgcatagtttggacctcttctcacgatatacggtatcagttcattaaataacgtatta 454

                                                                       
Query: 447 ctattacatgactgtattggtcctgttaggtctttctcgtatagttcttggaattcatca 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctattacatgactgtattggtcctgttaggtctttctcgtatagttcttggaattcatca 514

                                                                       
Query: 507 gtaagagttgatccaaatgatttaccaaaatatgccaaaataccacacataccaaactaa 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtaagagttgatccaaatgatttaccaaaatatgccaaaataccacacataccaaactaa 574

                                                                       
Query: 567 aagcgaccaactcaagtagcttattgtactctaattgaagtataacaactctacatgtaa 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aagcgaccaactcaagtagcttattgtactctaattgaagtataacaactctacatgtaa 634

                                                                       
Query: 627 agctttattaccagaggggtccacctgagatgagatatatgtatattgacaacttttttt 686
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 635 agctttattaccagaggggtccacctgagatgagatatatgtatattgacaac-tttttt 693

                                                                       
Query: 687 ttttattttttcaggctgccaaacctttagaaataaatcaaacatgtaaataaagaacaa 746
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttttaatttttcaggctgccaaacctttagaaataaatcaaacatgtaaataaagaacaa 753

                                                                       
Query: 747 gattgactcttgatcgagaacgccattttacgaaaagaaccctagcgaatcgtaaatggt 806
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 754 gattgactcttgatcgagaacgccattttacgaaaagaaccctagcgaatcgtaaatgg- 812

                                                                       
Query: 807 tttcgaacccacagcgaaactggttttttacatttatagaggtgaacttttgtttattcc 866
           ||||||||| ||||||||||| |||||||||||| |||||||   || | ||||||| ||
Sbjct: 813 tttcgaaccaacagcgaaact-gttttttacattcatagagggtgacatctgtttatccc 871

                   
Query: 867 aaatggac 874
           ||||||||
Sbjct: 872 aaatggac 879


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,825
Number of Sequences: 1807
Number of extensions: 12825
Number of successful extensions: 259
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)