BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZF01RM1.SCF screened BAC_end
         (875 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig945                                                         1588   0.0  

>3x_Contig945 
          Length = 3379

 Score = 1588 bits (801), Expect = 0.0
 Identities = 822/828 (99%), Gaps = 1/828 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tgaagaaaatcttgtctttaattacaaggcttatgttgatcttttggctcgcctttctcg 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2362 tgaagaaaatcttgtctttaattacaaggcttatgttgatcttttggctcgcctttctcg 2421

                                                                        
Query: 108  tacacccaacaatgacactccaataaatgttaatttgggcaatatagccaccaacgctgc 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2422 tacacccaacaatgacactccaataaatgttaatttgggcaatatagccaccaacgctgc 2481

                                                                        
Query: 168  aatcgagttaacatctagttcaatgcattttaactttagatctgagttgttgactatatt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2482 aatcgagttaacatctagttcaatgcattttaactttagatctgagttgttgactatatt 2541

                                                                        
Query: 228  aatcagaaggatatcaaaaccaaacccatcgattgatcctttctatcataaagctataaa 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2542 aatcagaaggatatcaaaaccaaacccatcgattgatcctttctatcataaagctataaa 2601

                                                                        
Query: 288  aacaattgaagggattttgaatgaagatgaagaaggtaacgtatcagttgaggtgatcag 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2602 aacaattgaagggattttgaatgaagatgaagaaggtaacgtatcagttgaggtgatcag 2661

                                                                        
Query: 348  acttttatctaaagttcttaaaacaagaaattataacgttgatgaatcggttattaatgt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2662 acttttatctaaagttcttaaaacaagaaattataacgttgatgaatcggttattaatgt 2721

                                                                        
Query: 408  acttctttctttagatatccttcatgactacgacccgaacactaaaacagaggaagagtt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 acttctttctttagatatccttcatgactacgacccgaacactaaaacagaggaagagtt 2781

                                                                        
Query: 468  caaaatgaagctaaggaagaaggatagggtacatctttctaagaaagaaaagaaagctcg 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 caaaatgaagctaaggaagaaggatagggtacatctttctaagaaagaaaagaaagctcg 2841

                                                                        
Query: 528  gaaggaaagaaaattaatagaagaagaaatgagagctgctgaacaagctgtctctgcaga 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 gaaggaaagaaaattaatagaagaagaaatgagagctgctgaacaagctgtctctgcaga 2901

                                                                        
Query: 588  agaaagagaaaggaatcaagcagaaattttgaaactgactttggcgctttatttgaacat 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 agaaagagaaaggaatcaagcagaaattttgaaactgactttggcgctttatttgaacat 2961

                                                                        
Query: 648  tttgagatccgatatcaccaaactagttggttctgtattggaaggtctagcgaagtttgg 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 tttgagatccgatatcaccaaactagttggttctgtattggaaggtctagcgaagtttgg 3021

                                                                        
Query: 708  gcacatggctaactntgatcttttgggtgatttcttggttgtcatgaaggaactcatagc 767
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 gcacatggctaactttgatcttttgggtgatttcttggttgtcatgaaggaactcatagc 3081

                                                                        
Query: 768  taatgcagagcttgacaacctatcatcttctgaggtgcgtaaggtattgctttgtatcgt 827
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 taatgcagagcttgacaacctatcatcttctgaggtgcgtaaggtattgctttgtatcgt 3141

                                                            
Query: 828  cacagccttttcccttagttcc-atcatactcatatgaaaatatcaat 874
            |||||||||||||||   |||| ||||||||||||||||| |||||||
Sbjct: 3142 cacagccttttccctagtttccaatcatactcatatgaaattatcaat 3189


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8430
Number of Sequences: 1807
Number of extensions: 8430
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 875
length of database: 10,358,551
effective HSP length: 16
effective length of query: 859
effective length of database: 10,329,639
effective search space: 8873159901
effective search space used: 8873159901
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)