BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF02FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1318 898 0.0
>3x_Contig1318
Length = 8566
Score = 898 bits (453), Expect = 0.0
Identities = 465/469 (99%)
Strand = Plus / Minus
Query: 85 ctacgatggatgctgcctctcaggatcctatcaactcccaggaaaatgatacaacaatgc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ctacgatggatgctgcctctcaggatcctatcaactcccaggaaaatgatacaacaatgc 772
Query: 145 tctcacaaattagaagaatcgaatctgaattgaaaagaaggttgccaataggatggtcta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tctcacaaattagaagaatcgaatctgaattgaaaagaaggttgccaataggatggtcta 712
Query: 205 caagttacaaaactttgcaaagggaattcgttgtgaacaagaaacttccccaatatgcgc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 caagttacaaaactttgcaaagggaattcgttgtgaacaagaaacttccccaatatgcgc 652
Query: 265 tagataaggcgttatacctgttagaaagacatgattctattcaactaagacatcaaggtc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tagataaggcgttatacctgttagaaagacatgattctattcaactaagacatcaaggtc 592
Query: 325 agaatatttatagaagtggagtatgaagttgcaaatgaaattcaggaacccctccttgaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agaatatttatagaagtggagtatgaagttgcaaatgaaattcaggaacccctccttgaa 532
Query: 385 cattgtctataactcatatgtaccactgtgtataaggaatttcagcgactatgtgttgat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cattgtctataactcatatgtaccactgtgtataaggaatttcagcgactatgtgttgat 472
Query: 445 atttatatagtgtaagattacccggataatgataatgataattggataatccgaaagaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atttatatagtgtaagattacccggataatgataatgataattggataatccgaaagaaa 412
Query: 505 acaactggatggtatattgggtttgatgcacaggatgagatgatgagat 553
| |||||||||||||||| || ||||||| |||||||||||||||||||
Sbjct: 411 aaaactggatggtatattaggattgatgcccaggatgagatgatgagat 363
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7336
Number of Sequences: 1807
Number of extensions: 7336
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)