BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF02RM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1622 1435 0.0
3x_Contig1486 182 8e-46
3x_Contig1722 180 3e-45
3x_Contig1727 178 1e-44
3x_Contig1636 178 1e-44
3x_Contig905 101 2e-21
>3x_Contig1622
Length = 13445
Score = 1435 bits (724), Expect = 0.0
Identities = 808/827 (97%), Gaps = 7/827 (0%)
Strand = Plus / Plus
Query: 44 gcttctagtaaccatgacatttt-aataagcttctaagcgtcacggtcatcatgaattgt 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4060 gcttctagtaaccatgacattttcaataagcttctaagcgtcacggtcatcatgaattgt 4119
Query: 103 cgaatgatatattactcttgtgaaactattgaccacaaaacatgaccataactcaatata 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4120 cgaatgatatattactcttgtgaaactattgaccacaaaacatgaccataactcaatata 4179
Query: 163 aatatctctccctgccagaaaatttttacagcatggttctttggttgtaaacatttcaca 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4180 aatatctctccctgccagaaaatttttacagcatggttctttggttgtaaacattccaca 4239
Query: 223 gaaattaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4240 gaaattaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgc 4299
Query: 283 ccgcgcaggttcgagtcctgctgttgtcgttatttttttataagttagacttcttaacat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4300 ccgcgcaggttcgagtcctgctgttgtcgttatttttttataagttagacttcttaacat 4359
Query: 343 ttcttttcttgtacaacgtgtgttggcaacaaatcacgctacataatatataccgcgttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4360 ttcttttcttgtacaacgtgtgttggcaacaaatcacgctacataatatataccgcgttt 4419
Query: 403 gtggttcctagcagaggttttgttgaaataattcaaactgcttttttaccatctgatttg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4420 gtggttcctagcagaggttttgttgaaataattcaaactgcttttttaccatctgatttg 4479
Query: 463 ggagagcattactgtgagtattagctgttaattgtatccgattgcacgtgtttttgacaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4480 ggagagcattactgtgagtattagctgttaattgtatccgattgcacgtgtttttgacaa 4539
Query: 523 gcgtaacattgataccccggggtagccgattttataaccataccagtatttcattcaata 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4540 gcgtaacattgataccccggggtagccgattttataaccataccagtatttcattcaata 4599
Query: 583 attttagatatgtctgttctacggaggactattgatccaatagcatctctgtgcactcca 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4600 attttagatatgtctgttctacggaggactattgatccaatagcatctctgtgcactcca 4659
Query: 643 ngcttagtaacgaacaggagtcccttcttgttgaaactgtgtaatgtactggtcgatata 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4660 ggcttagtaacgaacaggagtcccttcttgttgaaactgtgtaatgtactggtcgatata 4719
Query: 703 ttctgattaaacatctcttcctacaaaaatt-ggcaacagggccgagcggttaaggcgaa 761
||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct: 4720 ttctgattaaacatctcttcctacagaaattgggcaacatggccgagcggttaaggcgaa 4779
Query: 762 agattaaaaatcttttgggctcttgcccg-gcaagttcgagtccctgc-gttggccgcat 819
|||||| ||||||||||||||| |||||| ||| |||||||| ||||| |||| | |||
Sbjct: 4780 agattagaaatcttttgggctc-tgcccgcgcaggttcgagt-cctgctgttgtcgtcat 4837
Query: 820 ttttttggtttatttaaaaacctttttgttttaaaggccgcaataga 866
|||||| |||||||||||||| ||||||||||||| || ||||||||
Sbjct: 4838 tttttt-gtttatttaaaaacttttttgttttaaatgcagcaataga 4883
>3x_Contig1486
Length = 12131
Score = 182 bits (92), Expect = 8e-46
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 229 aggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11494 aggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgc 11435
Query: 289 aggttcgagtcctgctgttgtcgttatttttt 320
||||||||||||||||||||||||||||||||
Sbjct: 11434 aggttcgagtcctgctgttgtcgttatttttt 11403
>3x_Contig1722
Length = 17718
Score = 180 bits (91), Expect = 3e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 230 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 1662
Query: 290 ggttcgagtcctgctgttgtcgttatttttt 320
|||||||||||||||||||||||||||||||
Sbjct: 1661 ggttcgagtcctgctgttgtcgttatttttt 1631
>3x_Contig1727
Length = 17872
Score = 178 bits (90), Expect = 1e-44
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 228 taggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13281 taggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcg 13340
Query: 288 caggttcgagtcctgctgttgtcgttattttttt 321
|||||||||||||||||||||||||||| |||||
Sbjct: 13341 caggttcgagtcctgctgttgtcgttatcttttt 13374
>3x_Contig1636
Length = 15667
Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 230 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6398 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 6339
Query: 290 ggttcgagtcctgctgttgtcgttattttt 319
||||||||||||||||||||||||||||||
Sbjct: 6338 ggttcgagtcctgctgttgtcgttattttt 6309
>3x_Contig905
Length = 2723
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 227 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 286
||||||| ||||||||| ||||||||||| ||| | ||||||| |||||||||||||||
Sbjct: 1800 ttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgcccgc 1741
Query: 287 gcaggttcgagtcctgctgttgtcgttattttttt 321
|| ||||| | |||||||| |||||||||||||||
Sbjct: 1740 gctggttcaaatcctgctggtgtcgttattttttt 1706
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6668
Number of Sequences: 1807
Number of extensions: 6668
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 6
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)