BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF04FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1174 0.0
>3x_Contig1801
Length = 57606
Score = 1174 bits (592), Expect = 0.0
Identities = 672/692 (97%), Gaps = 5/692 (0%)
Strand = Plus / Plus
Query: 85 tcttgtttgtacaacttttcactcgtctcttgttcgtccatgcagatgtttcgattgtaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54404 tcttgtttgtacaacttttcactcgtctcttgttcgtccatgcagatgtttcgattgtaa 54463
Query: 145 aaccaactagcggtgcttcttactcaccagaatcgggcagtgactcgattgatattgaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54464 aaccaactagcggtgcttcttactcaccagaatcgggcagtgactcgattgatattgaaa 54523
Query: 205 tcgtatgggaagaaagtgtggatttaccttctatttccagttacgactatttcactttta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54524 tcgtatgggaagaaagtgtggatttaccttctatttccagttacgactatttcactttta 54583
Query: 265 gtttgttatatggaccaggcacggatatggatctaatcgataaagtagaagaagtggccg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54584 gtttgttatatggaccaggcacggatatggatctaatcgataaagtagaagaagtggccg 54643
Query: 325 cctcaaacatcacattatccgaatcccagtactcctatacacctagtttctccatcgcag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54644 cctcaaacatcacattatccgaatcccagtactcctatacacctagtttctccatcgcag 54703
Query: 385 atgctggaaacggacaatttttcatccaagtttatgcatattctaaagagttgggttata 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54704 atgctggaaacggacaatttttcatccaagtttatgcatattctaaagagttgggttata 54763
Query: 445 ccattcattactcacccaggttcaagatcacctcgatctccggcggtgccaccacttaca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54764 ccattcattactcacccaggttcaagatcacctcgatctccggcggtgccaccacttaca 54823
Query: 505 cctacacaaccgattcagatgcagttccaacaccggaatggagtttggccaatagtggta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54824 cctacacaaccgattcagatgcagttccaacaccggaatggagtttggccaatagtggta 54883
Query: 565 tcgatacaaaatcgttcactgtgccgtacactcaacaaactgggatcagaaggtacgctt 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54884 tcgatacaaaatcgttcactgtgccgtacactcaacaaactgggatcagaaggtacgctc 54943
Query: 625 caatgcagaccccaccaggaactgcaattacagtaacaacatggttcaagaggttcgcca 684
|||||||||||| |||||||||||||||||||||||||||||||| || |||| ||| |
Sbjct: 54944 caatgcagacccaaccaggaactgcaattacagtaacaacatggtccagaaggtacgcaa 55003
Query: 685 cgagtggcggtcacctactataccattctttgggaactacttggaacaaatgaccccttt 744
||||| || |||||||||||||||| || || |||||| |||||||||||||| | ||
Sbjct: 55004 cgagt-gcagtcacctactataccagtc-ttcggaactcactggaacaaatgaccac-tt 55060
Query: 745 acaacccgggtttggtcctacttcaagaactt 776
||| |||||| |||||||||| ||||||||||
Sbjct: 55061 acaccccggg-ttggtcctac-tcaagaactt 55090
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5293
Number of Sequences: 1807
Number of extensions: 5293
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)