BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZF05FM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1399                                                         987   0.0  

>3x_Contig1399 
          Length = 7157

 Score =  987 bits (498), Expect = 0.0
 Identities = 582/606 (96%), Gaps = 3/606 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   atctcgcaccccaatgtgatgggtctctacgaggtatgggaaaacaaatctgagttatat 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4636 atctcgcaccccaatgtgatgggtctctacgaggtatgggaaaacaaatctgagttatat 4577

                                                                        
Query: 147  ttggtattggaatatgttgaaggtggtgaattgttcgactatttggtctcgaaggggaag 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4576 ttggtattggaatatgttgaaggtggtgaattgttcgactatttggtctcgaaggggaag 4517

                                                                        
Query: 207  ttgccggaaagtgatgctatccattatttcaaacagatagtacaagctgtagcatactgc 266
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4516 ttgccggaaagtgaggctatccattatttcaaacagatagtacaagctgtagcatactgc 4457

                                                                        
Query: 267  catgggttcaatatttgtcatcgtgatttgaaaccagagaatttgcttttggataagaaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4456 catgggttcaatatttgtcatcgtgatttgaaaccagagaatttgcttttggataagaaa 4397

                                                                        
Query: 327  aagagatctatcaagattgcagactttgggatggctgccctagagacttcggataaactg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4396 aagagatctatcaagattgcagactttgggatggctgccctagagacttcggataaactg 4337

                                                                        
Query: 387  ctggagacctcgtgtggctcaccacattatgcttctcctgaaatcgttctgggtcggaaa 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336 ctggagacctcgtgtggctcaccacattatgcttctcctgaaatcgttctgggtcggaaa 4277

                                                                        
Query: 447  tatcatggatccccaagtgatgtttggtcctgtggtatcatcttgttcgccctgttgact 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276 tatcatggatccccaagtgatgtttggtcctgtggtatcatcttgttcgccctgttgact 4217

                                                                        
Query: 507  gaacatttaccctttaacgacgataacgtcaagaaattgttgttggaaagtacagttcag 566
            | |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 4216 ggacatttaccctttaacgacgataacgtcaagaaattgttgtt-gaaagtacag-tcag 4159

                                                                        
Query: 567  gaaaatattaaatgccccaatgtttattggtaaaggctaaaaatttaatttttagattcc 626
            |||||||| | ||||||||||| |||| |||| |||||||| ||||||||| |||| |||
Sbjct: 4158 gaaaatatcagatgccccaatggttatcggtagaggctaaagatttaatttctagaatcc 4099

                                                                        
Query: 627  tgtgggtgaatcc-aatttaagaattacttttgaccaaatttttcaccatgatttgctga 685
            ||  |||  |||| |||  |||||||||| |||||||||| || || ||||| |||||||
Sbjct: 4098 tggtggtagatccaaatagaagaattactattgaccaaatcttacagcatgagttgctga 4039

                  
Query: 686  cgaaat 691
            ||||||
Sbjct: 4038 cgaaat 4033


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,485
Number of Sequences: 1807
Number of extensions: 12485
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)