BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF06RM1.SCF screened BAC_end
(1327 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 579 e-165
>3x_Contig1542
Length = 13810
Score = 579 bits (292), Expect = e-165
Identities = 337/349 (96%), Gaps = 3/349 (0%)
Strand = Plus / Plus
Query: 153 ttgatccactcnaaaggganagacgagatgtgngaagaattcctatcaaatcagatagaa 212
||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 5996 ttgatccactcgaaaaggagagacgagatgtg-gaagaattcctatcaaatcagataga- 6053
Query: 213 ggaacctagaaanacaatttgatctactccaaattgatgtagacaggctgatattggtgc 272
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6054 ggaac-tagaaagacaatttgatctactccaaattgatgtagacaggctgatattgttgc 6112
Query: 273 aaaagaagagaaaaacagcaactccagaaaatgaaaaagaactgcaacgcttcaaggatc 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6113 aaaagaagagaaaaacagcaactccagaaaatgaaaaagaactgcaacgcttcaaggatc 6172
Query: 333 tacagggaagatacaggtatcaccagcaacaaatggaattggctttaaggttgattgcga 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6173 tacagggaagatacaggtatcaccagcaacaaatggaattggctttaaggttgattgcga 6232
Query: 393 acgaagagcttgaaccgcaacaggttagagatattgaagaggagatattattctacgtgg 452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6233 acgaagagcttgaaccgcaacaggttagagatattgaagaggagatattattctacgttg 6292
Query: 453 aagaaaaccaaaccgaagggatagtagaagatgacagaatttatgaagg 501
|||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 6293 aagaaaaccaaaccgaagggtttgtagaagatgacagtatttatgaagg 6341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5819
Number of Sequences: 1807
Number of extensions: 5819
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 1327
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1311
effective length of database: 10,329,639
effective search space: 13542156729
effective search space used: 13542156729
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)