BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF07FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1223 0.0
>3x_Contig1686
Length = 15382
Score = 1223 bits (617), Expect = 0.0
Identities = 705/724 (97%), Gaps = 9/724 (1%)
Strand = Plus / Minus
Query: 88 cgaccaaagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13541 cgaccaaagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggt 13482
Query: 148 caacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13481 caacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaa 13422
Query: 208 cgaaactcaacattttcttgcgttcagggtcgttagcagacaaagtagcagccttttcaa 267
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13421 cgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaa 13362
Query: 268 tgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggagg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13361 tgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggagg 13302
Query: 328 cgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgacca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13301 cgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgacca 13242
Query: 388 aataatcatagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13241 aataatcatagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaa 13182
Query: 448 cggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13181 cggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccag 13122
Query: 508 gtgaagatctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13121 gtgaagatctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccga 13062
Query: 568 ctggagtagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacaataa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13061 ctggagtagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacaataa 13002
Query: 628 cgttatacaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagttccca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13001 cgttatacaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagtaccca 12942
Query: 688 aaacgacaaaggtttttcctttggagaaaccgttagcgaaagtggccactttgaggaaat 747
||||||||| |||||| | |||||| |||||||||||||||||| || |||||| |||
Sbjct: 12941 aaacgacaagggtttt--ccttggag-aaccgttagcgaaagtgg-cagcttgagg-aat 12887
Query: 748 ttgaagaagtgggattagctttccctgtacaattcatagggaaacgttaaccagttccag 807
|||| || || |||||||| |||||||||||||||||| ||||||| |||||||| ||||
Sbjct: 12886 ttgaggaggt-ggattagc-ttccctgtacaattcata-ggaaacg-taaccagtaccag 12831
Query: 808 ccaa 811
||||
Sbjct: 12830 ccaa 12827
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6732
Number of Sequences: 1807
Number of extensions: 6732
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)