BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZF07RM1.SCF screened BAC_end (897 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig781 236 6e-62 >3x_Contig781 Length = 2349 Score = 236 bits (119), Expect = 6e-62 Identities = 186/198 (93%), Gaps = 8/198 (4%) Strand = Plus / Plus Query: 596 tattcgactcagtttcaaaagtacctg-acacagaanagccttgtttggttggacgattc 654 ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || Sbjct: 4 tattcgactcagtttcaaaagtacctggacacagaaaagccttgtttggttggacga-tc 62 Query: 655 ctg-tgtttgtacagaagcgtgctgttttcgagacaagccctcgct-aaagaaaaatcag 712 ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 63 ctgttgtttgtacagaagcgtgctgtttccgagacaagccctcgctaaaagaaaaatcag 122 Query: 713 aggacccagntttcctttttttttttttggaaattttccttatcacttgcgcattcagac 772 ||||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||| Sbjct: 123 aggacccag-tttcctttttttttttttggatattttcc-tatcacttgc-cattcaga- 178 Query: 773 ccgaaagttttatttttt 790 ||||||||| |||||||| Sbjct: 179 ccgaaagttatatttttt 196 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,691 Number of Sequences: 1807 Number of extensions: 14691 Number of successful extensions: 230 Number of sequences better than 1.0e-20: 1 length of query: 897 length of database: 10,358,551 effective HSP length: 16 effective length of query: 881 effective length of database: 10,329,639 effective search space: 9100411959 effective search space used: 9100411959 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)