BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF08FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 844 0.0
>3x_Contig846
Length = 2695
Score = 844 bits (426), Expect = 0.0
Identities = 519/541 (95%), Gaps = 8/541 (1%)
Strand = Plus / Minus
Query: 89 tggccgctcgcggttccatatattgttgggataacgctactcgtggtctcgatgcttcta 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tggccgctcgcggttccatatattgttgggataacgctactcgtggtctcgatgcttcta 582
Query: 149 ctgctcttgaatatacagaagctatcagatgtatgacaaacttactaaagtccactgcgt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgctcttgaatatacagaagctatcagatgtatgacaaacttactaaagtccactgcgt 522
Query: 209 tgattactgtttttcatagcaagtgaaaacatctatgagactttcgataaggttaccatt 268
|||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgattactgtgtacca-agcaagtgaaaacatctatgagactttcgataaggttaccatt 463
Query: 269 ctctacgaaggtaaacaaatatatttcggtcgcattgaagaggctaagaagtatttcgaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctctacgaaggtaaacaaatatatttcggtcgcattgaagaggctaagaagtatttcgaa 403
Query: 329 aacttggggttcatctgtccagcaaggcaagcaacggctgaatttttgacctctttaact 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aacttggggttcatctgtccagcaaggcaagcaacggctgaatttttgacctctttaact 343
Query: 389 gattctaaaggtttacgcagagtaagacctggtttcgaaaacaaagtcccaagaaccaga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gattctaaaggtttacgcagagtaagacctggtttcgaaaacaaagtcccaagaaccaga 283
Query: 449 gacgatttcgtcagggttttgggaagagtccaaagaatatcatgacttaatacaaagtat 508
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gacgatttcgtcaggg-tttgggaagagtccaaagaatatcatgacttaatacaaagtat 224
Query: 509 cgaacattacaaaacgaaag-agtcgatggtgc-aaaactattcagtt-tttaaagaatc 565
|||||||||| ||||||||| |||||||||||| || ||||| ||||| || ||||||||
Sbjct: 223 cgaacattacgaaacgaaagaagtcgatggtgcgaagactatccagttcttcaaagaatc 164
Query: 566 gatggttgaagaaaagaata--gctttcaaaaagaag-ctaaatttactatttcccattg 622
|||||||||||| || ||| |||| | ||||||| ||||||||||||||||| ||||
Sbjct: 163 gatggttgaagagaaagataaggcttcgagaaagaagtctaaatttactatttcctattg 104
Query: 623 g 623
|
Sbjct: 103 g 103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8986
Number of Sequences: 1807
Number of extensions: 8986
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)