BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF08RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig470 450 e-126
3x_Contig489 105 2e-22
>3x_Contig470
Length = 2866
Score = 450 bits (227), Expect = e-126
Identities = 237/239 (99%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 49 tcaatcattccccaggatgctcaggcattcgaaggtactgtcagaagtaacctagatcct 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2622 tcaatcattccccaggatgctcaggcattcgaaggtactgtcagaagtaacctagatcct 2681
Query: 109 ttcaatcgtcatacagatgctgaaatctggaaggcattggaactgtctcatttgaaaccc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2682 ttcaatcgtcatacagatgctgaaatctggaaggcattggaactgtctcatttgaaaccc 2741
Query: 169 catatcgaaagaattgtcagtgaacttccagacgatgagaataagcccacagatctgcta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2742 catatcgaaagaattgtcagtgaacttccagacgatgagaataagcccacagatctgcta 2801
Query: 229 gacacacagatctcagataacggtaacaacttgtctatgggtcaaagacagctactatg 287
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 2802 gacacacagatctcagataacggtaacaacttgtatat-ggtcaaagacagctactatg 2859
>3x_Contig489
Length = 2063
Score = 105 bits (53), Expect = 2e-22
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 618 tatttaagtggaaacaaaactataccgctctgtatatatacttcccggatttgattctct 677
|||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2053 tattaaagtgaaaacaaaactataccgctctgtatatatac-tcccggatttgattctct 1995
Query: 678 cccggatactaatttat 694
|| | ||||||||||||
Sbjct: 1994 cctgtatactaatttat 1978
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7788
Number of Sequences: 1807
Number of extensions: 7788
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)