BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF09RM1.SCF screened BAC_end
(1140 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 375 e-103
>3x_Contig1536
Length = 11572
Score = 375 bits (189), Expect = e-103
Identities = 308/352 (87%), Gaps = 1/352 (0%)
Strand = Plus / Minus
Query: 127 acacgcagnnnatgctaaggagnacggggaagatgntntcgaaatccaggctgatactat 186
|||||||| ||||||||||| |||| ||||||| | ||||||||||||||||| ||||
Sbjct: 8818 acacgcagtttatgctaaggagtacggtgaagatgttttcgaaatccaggctgattctat 8759
Query: 187 ccctgaacatncaaacgtcgntatgggcgatgatatcattgccaccggnggctccgcaaa 246
|||||||||| ||||||||| ||| | ||||||||||||||||||||| |||||||||||
Sbjct: 8758 ccctgaacattcaaacgtcgttattgtcgatgatatcattgccaccggtggctccgcaaa 8699
Query: 247 agcagccggngacttggctttgcaggtgaatgcaaacatctnggaganctggtncggtat 306
||||||||| ||||||||||||||| ||||||||||||||| |||| ||| | || |||
Sbjct: 8698 agcagccggtgacttggctttgcagttgaatgcaaacatcttggagttctgtttcgttat 8639
Query: 307 ggagtcggattggccggaaaggtactcaaaaactacaggcaccatctngtacttagntaa 366
||||| ||||| | ||||||||||||||||||||||||||||||| ||||| | |||
Sbjct: 8638 ggagttggatt-tcttgaaaggtactcaaaaactacaggcaccatcttttactttgttaa 8580
Query: 367 gggggcaggaagaggctggatcaaaaggaacccagctaaaccacgttgtaaaactctgta 426
| || |||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||
Sbjct: 8579 gtggtcaggaagaggctttatcaaaatgaacccagctaaaccacgttttaaaactctcta 8520
Query: 427 tggagcttgttaatacgaagacgatactacagaacataganaaacagngcaa 478
|||||||| ||||| ||| || ||||||||||||||||| |||||| ||||
Sbjct: 8519 tggagcttcttaattcgattactatactacagaacatagataaacagtgcaa 8468
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6062
Number of Sequences: 1807
Number of extensions: 6062
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 1140
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1124
effective length of database: 10,329,639
effective search space: 11610514236
effective search space used: 11610514236
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)