BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF10FM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1094 0.0
>3x_Contig1801
Length = 57606
Score = 1094 bits (552), Expect = 0.0
Identities = 646/667 (96%), Gaps = 8/667 (1%)
Strand = Plus / Minus
Query: 88 agatcggaagaataatcagacttcccattttctaaacttgtttcgtgcggttgctgcgct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11399 agatcggaagaataatcagacttcccattttctaaacttgtttcgtgcggttgctgcgct 11340
Query: 148 gtaccatacgcttctcttcttcttgtttctctatccattgcatcagagtaacttaatgac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11339 gtaccatacgcttctcttcttcttgtttctctatccattgcatcagagtaacttaatgac 11280
Query: 208 tatatatctcttaacgaaaggaatattaaacccatgtacataaatatcatatatatttct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11279 tatatatctcttaacgaaaggaatattaaacccatgtacataaatatcatatatatttct 11220
Query: 268 gaaaatatcacatttaatattgagagatggactgaactgcggtgtgaatggaattaagaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11219 gaaaatatcacatttaatattgagagatggactgaactgcggtgtgaatggaattaagaa 11160
Query: 328 cctattttattcggttaattagatcggtattatacaaaatatcaagtcaaaatgctacat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11159 cctattttattcggttaattagatcggtattatacaaaatatcaagtcaaaatgctacat 11100
Query: 388 atgtgtttgcttacattagtcgccaagttgtaacttgtccaacgctacagagtcgaattg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11099 atgtgtttgcttacattagtcgccaagttgtaacttgtccaacgctacagagtcgaattg 11040
Query: 448 taatgaaggattacgagctgtttgtgatttctttggaatggtacccggtgggtaccactc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11039 taatgaaggattacgagctgtttgtgatttctttggaatggtacccggtgggtaccactc 10980
Query: 508 ccctgtgaaaggttcttctgtgatgaagggatgcaaaatggcctgttgtggggtccaacg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10979 ccctgtgaaaggttcttctgtgatgaagggatgcaaaatggcctgttgtggggtccaacg 10920
Query: 568 ttcgagtggattgaggttcaacact-ctctcaaaaaatgt-acaagcagtccctgttctt 625
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 10919 ttcgagtggattgaggttcaacactcctctcaaaaaatgtaacaagcagtccctgttctt 10860
Query: 626 aatttnt-tttcaac-agtgctggattcccag-aattctttttgaaattcttgcg-tacg 681
|||| | ||||||| |||||||||||||||| ||| ||||| |||||||||||| ||||
Sbjct: 10859 tatttctctttcaacaagtgctggattcccagaaatccttttcgaaattcttgcgttacg 10800
Query: 682 aattttttcatcgaacaatttttgttttaacgtatttcttccctgactttttcgttagca 741
|||| | |||||||||||| | || ||| |||||| ||||| ||||| | ||||||||||
Sbjct: 10799 aattatatcatcgaacaatatatg-tttcacgtatctcttcactgac-tcttcgttagca 10742
Query: 742 acaaact 748
||||||
Sbjct: 10741 gcaaact 10735
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8647
Number of Sequences: 1807
Number of extensions: 8647
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)