BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZF10RM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1059 1396 0.0
>3x_Contig1059
Length = 3822
Score = 1396 bits (704), Expect = 0.0
Identities = 792/812 (97%), Gaps = 7/812 (0%)
Strand = Plus / Minus
Query: 49 ttctaatttgatagat-aaggtatcgacgctttggttgtaattggtggtgacggttcact 107
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 ttctaatttgatagatcaaggtatcgacgctttggttgtaattggtggtgacggttcact 2737
Query: 108 aactggtgcagacttgttcagatccgaatggccatctctagttgaagaactagtgaagga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 aactggtgcagacttgttcagatccgaatggccatctctagttgaagaactagtgaagga 2677
Query: 168 cggtaagtttactgaggacgaagttgctctataccaaaacttaaccattgttggtatggt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 cggtaagtttactgaggacgaagttgctctataccaaaacttaaccattgttggtatggt 2617
Query: 228 cggctccatcgataacgatatgtctggtactgattctaccattggtgcttactctgcttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 cggctccatcgataacgatatgtctggtactgattctaccattggtgcttactctgcttt 2557
Query: 288 ggaaagaatctgtgagatggttgattacatcgacgctactgctaagtcacattcaagagc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2556 ggaaagaatctgtgagatggttgattacatcgacgctactgctaagtcacattcaagagc 2497
Query: 348 atttgttgtggaagtgatgggtaggcattgtggttggttaggtctaatgtctggtatcgc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 atttgttgtggaagtgatgggtaggcattgtggttggttaggtctaatgtctggtatcgc 2437
Query: 408 taccgcggctgattacattttcattccagagagagcagctcctcacggcaaatggcaaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 taccgcggctgattacattttcattccagagagagcagctcctcacggcaaatggcaaga 2377
Query: 468 tgagttgaaacgtgtttgtcaaaggcatagagaaaagggtcgtagaaataacacagttat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 tgagttgaaacgtgtttgtcaaaggcatagagaaaagggtcgtagaaataacacagttat 2317
Query: 528 cgttgcagaaggtgcattggatgatcaattaaacccaattaccgccgaacaagttaagga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 cgttgcagaaggtgcattggatgatcaattaaacccaattaccgccgaacaagttaagga 2257
Query: 588 tgtcttggtagaacttggtttagacaccaaaatcactacattgggacacgttcaaagaag 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2256 tgtcttggtagaacttggtttagacaccaaaatcactacattgggacacgttcaaagagg 2197
Query: 648 tggtacagctgtggcacatgatagatggttagctactttgcaaggtg-tgatgctgtcaa 706
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2196 tggtacagctgtggcacatgatagatggttagctactttgcaaggtgttgatgctgtcaa 2137
Query: 707 -gccattctgaacatgacttcaga-acttcatctccattgattggtattcttggaaaata 764
||||| |||||||||||| |||| ||| |||||||||||||||||||||| | ||| |
Sbjct: 2136 ggccatcctgaacatgactccagagactccatctccattgattggtattctcgaaaataa 2077
Query: 765 ggttatcaaaatgcccttgggttgaatctgtgaaactcaaaaaacaagttgctgcagcca 824
|||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2076 ggttatcagaatgccctt-ggttgaatctgtgaaactcacaaaacaagttgctgcagcca 2018
Query: 825 ttggaaacttaagatttcgattaaagccattt 856
| ||| || |||||||||| |||||||||||
Sbjct: 2017 -tcgaagctaaagatttcga-taaagccattt 1988
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5831
Number of Sequences: 1807
Number of extensions: 5831
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)