BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZF11FM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1718                                                        1005   0.0  
3x_Contig17                                                           107   4e-23
3x_Contig1623                                                         105   2e-22
3x_Contig1487                                                         103   6e-22

>3x_Contig1718 
          Length = 19496

 Score = 1005 bits (507), Expect = 0.0
 Identities = 589/611 (96%), Gaps = 4/611 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   tgcagttttcttttcgagtttatctaggcatggaaactgcatcgcaggatttgtagacgt 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5495 tgcagttttcttttcgagtttatctaggcatggaaactgcatcgcaggatttgtagacgt 5436

                                                                        
Query: 147  gttcaatgctgaggaatatctggtccaattagttcgcacagcattgtgagctgcaggaaa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5435 gttcaatgctgaggaatatctggtccaattagttcgcacagcattgtgagctgcaggaaa 5376

                                                                        
Query: 207  cgacttttttgtattcgaatagtattgccgatgacattatcaactctatttcctcacaac 266
            ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5375 cgacttttttgaag-cgaatagtattgccgatgacattatcaactctatttcctcacaac 5317

                                                                        
Query: 267  ttcagtttcggattcagagagattcgataattcagtgactcggatgccgatgtcatccag 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5316 ttcagtttcggattcagagagattcgataattcagtgactcggatgccgatgtcatccag 5257

                                                                        
Query: 327  tgtaaaataatgtaagaaacacttcagtgaagataaaacagatgataaggttgtaataag 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5256 tgtaaaataatgtaagaaacacttcagtgaagataaaacagatgataaggttgtaataag 5197

                                                                        
Query: 387  aataaattcattgctctactgttgaaagttacagttattaataagagcttaatatataca 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5196 aataaattcattgctctactgttgaaagttacagttattaataagagcttaatatataca 5137

                                                                        
Query: 447  agaagccacagagctgatcacgtgcttttgtgaacgaaaatattctcatttgacactttc 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5136 agaagccacagagctgatcacgtgcttttgtgaacgaaaatattctcatttgacactttc 5077

                                                                        
Query: 507  cactgggttgcaatcagtggtagaaaagatcagaaaattaaaaaaatctggggcgagctg 566
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 5076 cactgggttgcaatcagtggtagaaaagatcagaaattaaaaaaaatctggggcgagctg 5017

                                                                        
Query: 567  ggaattgaaccca-ggcctctcgcatgctttgcagtagttaaactttcgttatcgaagct 625
            ||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 5016 ggaattgaacccagggcctctcgcatgctttgcagtagttaaacttcgtttatcgaagct 4957

                                                                        
Query: 626  t-gcttaggttcttaccccaagcgagattattcccattagaccacacgcccttcgcaatt 684
            | |||  | | || |||| |||||||| |  | ||| |||||||||||||| ||||||||
Sbjct: 4956 tcgctaggctactaacccaaagcgagaatcataccactagaccacacgccc-tcgcaatt 4898

                       
Query: 685  ttggcagaaaa 695
            |||||||||||
Sbjct: 4897 ttggcagaaaa 4887


>3x_Contig17 
          Length = 819

 Score =  107 bits (54), Expect = 4e-23
 Identities = 76/82 (92%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                       
Query: 546 aaaaaaatctggggcgagctgggaattgaaccca-ggcctctcgcatgctttgcagtagt 604
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 127 aaaaaaatttggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagt 186

                                 
Query: 605 taaactttcgttatcgaagctt 626
           ||||| |   ||||||||||||
Sbjct: 187 taaacctcgtttatcgaagctt 208


>3x_Contig1623 
          Length = 14379

 Score =  105 bits (53), Expect = 2e-22
 Identities = 69/73 (94%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                        
Query: 555  tggggcgagctgggaattgaacccagg-cctctcgcatgctttgcagtagttaaactttc 613
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  
Sbjct: 7006 tggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacttcg 7065

                         
Query: 614  gttatcgaagctt 626
             ||||||||||||
Sbjct: 7066 tttatcgaagctt 7078


>3x_Contig1487 
          Length = 9002

 Score =  103 bits (52), Expect = 6e-22
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                        
Query: 556  ggggcgagctgggaattgaacccagg-cctctcgcatgctttgcagtagttaaactttcg 614
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   
Sbjct: 5331 ggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacttcgt 5390

                        
Query: 615  ttatcgaagctt 626
            ||||||||||||
Sbjct: 5391 ttatcgaagctt 5402


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7545
Number of Sequences: 1807
Number of extensions: 7545
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 4
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)