BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZF11FM1.SCF screened BAC_end (937 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1718 1005 0.0 3x_Contig17 107 4e-23 3x_Contig1623 105 2e-22 3x_Contig1487 103 6e-22 >3x_Contig1718 Length = 19496 Score = 1005 bits (507), Expect = 0.0 Identities = 589/611 (96%), Gaps = 4/611 (0%) Strand = Plus / Minus Query: 87 tgcagttttcttttcgagtttatctaggcatggaaactgcatcgcaggatttgtagacgt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5495 tgcagttttcttttcgagtttatctaggcatggaaactgcatcgcaggatttgtagacgt 5436 Query: 147 gttcaatgctgaggaatatctggtccaattagttcgcacagcattgtgagctgcaggaaa 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5435 gttcaatgctgaggaatatctggtccaattagttcgcacagcattgtgagctgcaggaaa 5376 Query: 207 cgacttttttgtattcgaatagtattgccgatgacattatcaactctatttcctcacaac 266 ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5375 cgacttttttgaag-cgaatagtattgccgatgacattatcaactctatttcctcacaac 5317 Query: 267 ttcagtttcggattcagagagattcgataattcagtgactcggatgccgatgtcatccag 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5316 ttcagtttcggattcagagagattcgataattcagtgactcggatgccgatgtcatccag 5257 Query: 327 tgtaaaataatgtaagaaacacttcagtgaagataaaacagatgataaggttgtaataag 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5256 tgtaaaataatgtaagaaacacttcagtgaagataaaacagatgataaggttgtaataag 5197 Query: 387 aataaattcattgctctactgttgaaagttacagttattaataagagcttaatatataca 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5196 aataaattcattgctctactgttgaaagttacagttattaataagagcttaatatataca 5137 Query: 447 agaagccacagagctgatcacgtgcttttgtgaacgaaaatattctcatttgacactttc 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5136 agaagccacagagctgatcacgtgcttttgtgaacgaaaatattctcatttgacactttc 5077 Query: 507 cactgggttgcaatcagtggtagaaaagatcagaaaattaaaaaaatctggggcgagctg 566 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 5076 cactgggttgcaatcagtggtagaaaagatcagaaattaaaaaaaatctggggcgagctg 5017 Query: 567 ggaattgaaccca-ggcctctcgcatgctttgcagtagttaaactttcgttatcgaagct 625 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5016 ggaattgaacccagggcctctcgcatgctttgcagtagttaaacttcgtttatcgaagct 4957 Query: 626 t-gcttaggttcttaccccaagcgagattattcccattagaccacacgcccttcgcaatt 684 | ||| | | || |||| |||||||| | | ||| |||||||||||||| |||||||| Sbjct: 4956 tcgctaggctactaacccaaagcgagaatcataccactagaccacacgccc-tcgcaatt 4898 Query: 685 ttggcagaaaa 695 ||||||||||| Sbjct: 4897 ttggcagaaaa 4887 >3x_Contig17 Length = 819 Score = 107 bits (54), Expect = 4e-23 Identities = 76/82 (92%), Gaps = 1/82 (1%) Strand = Plus / Plus Query: 546 aaaaaaatctggggcgagctgggaattgaaccca-ggcctctcgcatgctttgcagtagt 604 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 127 aaaaaaatttggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagt 186 Query: 605 taaactttcgttatcgaagctt 626 ||||| | |||||||||||| Sbjct: 187 taaacctcgtttatcgaagctt 208 >3x_Contig1623 Length = 14379 Score = 105 bits (53), Expect = 2e-22 Identities = 69/73 (94%), Gaps = 1/73 (1%) Strand = Plus / Plus Query: 555 tggggcgagctgggaattgaacccagg-cctctcgcatgctttgcagtagttaaactttc 613 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 7006 tggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacttcg 7065 Query: 614 gttatcgaagctt 626 |||||||||||| Sbjct: 7066 tttatcgaagctt 7078 >3x_Contig1487 Length = 9002 Score = 103 bits (52), Expect = 6e-22 Identities = 68/72 (94%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 556 ggggcgagctgggaattgaacccagg-cctctcgcatgctttgcagtagttaaactttcg 614 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 5331 ggggcgagctgggaattgaacccagggcctctcgcatgctttgcagtagttaaacttcgt 5390 Query: 615 ttatcgaagctt 626 |||||||||||| Sbjct: 5391 ttatcgaagctt 5402 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7545 Number of Sequences: 1807 Number of extensions: 7545 Number of successful extensions: 71 Number of sequences better than 1.0e-20: 4 length of query: 937 length of database: 10,358,551 effective HSP length: 16 effective length of query: 921 effective length of database: 10,329,639 effective search space: 9513597519 effective search space used: 9513597519 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)