BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZF11RM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1729                                                         938   0.0  
3x_Contig25                                                           157   5e-38

>3x_Contig1729 
          Length = 15481

 Score =  938 bits (473), Expect = 0.0
 Identities = 512/521 (98%), Gaps = 3/521 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   gcaattgaatcgtcttttgggtcttctgaggaaccggcagagtcatagaaagcttgttcc 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5419 gcaattgaatcgtcttttgggtcttctgaggaaccggcagagtcatagaaagcttgttcc 5478

                                                                        
Query: 107  tgtagcagttgcggattctcagacattctattcttggatattggcaagaagcgactcatg 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5479 tgtagcagttgcggattctcagacattctattcttggatattggcaagaagcgactcatg 5538

                                                                        
Query: 167  gttaacgtgtacagttgtatgacctctgatggcatccgtttaaatattttatttcttaga 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5539 gttaacgtgtacagttgtatgacctctgatggcatccgtttaaatattttatttcttaga 5598

                                                                        
Query: 227  ggcttcaataacttgtattcctcagtggtaactggcgtggtaggagtaatgggatcggcg 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5599 ggcttcaataacttgtattcctcagtggtaactggcgtggtaggagtaatgggatcggcg 5658

                                                                        
Query: 287  tcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaatttgaat 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5659 tcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaatttgaat 5718

                                                                        
Query: 347  atgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaacccatc 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5719 atgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaacccatc 5778

                                                                        
Query: 407  ttgattattgattggagtttttcgtttaatgatttcacccgatttagatatatcattgca 466
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 5779 ttgattattgattggagtttttcgtttaatgattccacccgatttagatatatcaatgca 5838

                                                                        
Query: 467  tgaacgtgctcattctctgggtattctttcctggaaactaccccaaaaggaatcgtcccc 526
            |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||
Sbjct: 5839 tgaacgtgctcattctct-ggtattctttcctggaaactacccaaaaaggaatcgtaccc 5897

                                                     
Query: 527  atagttgaactttggggtttgcccgtaaaatctgttaaaga 567
            ||||||| ||||||||||| | ||||||||||||| |||||
Sbjct: 5898 atagttg-actttggggttag-ccgtaaaatctgtaaaaga 5936


>3x_Contig25 
          Length = 1081

 Score =  157 bits (79), Expect = 5e-38
 Identities = 326/399 (81%), Gaps = 7/399 (1%)
 Strand = Plus / Plus

                                                                       
Query: 49  aattgaatcgtcttttgggtcttctgaggaaccggcagagtcatagaaagcttgttcctg 108
           |||||||| || |||||||| || |||||||  || ||||| |||||||| |||||  ||
Sbjct: 431 aattgaatggtgttttgggtgttgtgaggaagggggagagtgatagaaaggttgttggtg 490

                                                                       
Query: 109 tagcagttgcggattct-cagacattctattcttggatattggcaagaagcga-ctcatg 166
           ||| ||||| ||||| | |||| ||| |||| ||||||||||| |||||| || || |||
Sbjct: 491 taggagttggggattgtgcagagattgtattgttggatattgggaagaagggagctgatg 550

                                                                       
Query: 167 gttaa-cgtgtac-agttgtatgacctctgatggcatccg-tttaaatattttatttc-t 222
           ||||| ||||||  ||||||||||  | |||||| ||  | ||||||||||||||||  |
Sbjct: 551 gttaagcgtgtaggagttgtatgaggtgtgatgggatggggtttaaatattttattttgt 610

                                                                       
Query: 223 tagaggcttcaataacttgtattcc-tcagtggtaactggcgtggtaggagtaatgggat 281
           |||||| || ||||| |||||||   | |||||||| ||| |||||||||||||||||||
Sbjct: 611 tagagggttgaataagttgtattgggtgagtggtaagtggggtggtaggagtaatgggat 670

                                                                       
Query: 282 cggcgtcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaatt 341
            || || |||||||| ||||||||| |||  |||| ||| |||| |||||| ||||||||
Sbjct: 671 gggggtgaagtataagagtgtttaggttaggttgagatagttgagatttaagagtgaatt 730

                                                                       
Query: 342 tgaatatgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaac 401
           ||||||||||| ||  ||| ||||||||| |||||  ||||| || | |||  |||||| 
Sbjct: 731 tgaatatgatagttgcatgtgtaatattagtgttgggtttatgtggagattggattaaag 790

                                                  
Query: 402 ccatcttgattattgattggagtttttcgtttaatgatt 440
             || |||||||||||||||| |||||  ||||||||||
Sbjct: 791 ggatgttgattattgattggactttttgctttaatgatt 829


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7638
Number of Sequences: 1807
Number of extensions: 7638
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 2
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)