BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZF11RM1.SCF screened BAC_end (932 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1729 938 0.0 3x_Contig25 157 5e-38 >3x_Contig1729 Length = 15481 Score = 938 bits (473), Expect = 0.0 Identities = 512/521 (98%), Gaps = 3/521 (0%) Strand = Plus / Plus Query: 47 gcaattgaatcgtcttttgggtcttctgaggaaccggcagagtcatagaaagcttgttcc 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5419 gcaattgaatcgtcttttgggtcttctgaggaaccggcagagtcatagaaagcttgttcc 5478 Query: 107 tgtagcagttgcggattctcagacattctattcttggatattggcaagaagcgactcatg 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5479 tgtagcagttgcggattctcagacattctattcttggatattggcaagaagcgactcatg 5538 Query: 167 gttaacgtgtacagttgtatgacctctgatggcatccgtttaaatattttatttcttaga 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5539 gttaacgtgtacagttgtatgacctctgatggcatccgtttaaatattttatttcttaga 5598 Query: 227 ggcttcaataacttgtattcctcagtggtaactggcgtggtaggagtaatgggatcggcg 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5599 ggcttcaataacttgtattcctcagtggtaactggcgtggtaggagtaatgggatcggcg 5658 Query: 287 tcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaatttgaat 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5659 tcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaatttgaat 5718 Query: 347 atgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaacccatc 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5719 atgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaacccatc 5778 Query: 407 ttgattattgattggagtttttcgtttaatgatttcacccgatttagatatatcattgca 466 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 5779 ttgattattgattggagtttttcgtttaatgattccacccgatttagatatatcaatgca 5838 Query: 467 tgaacgtgctcattctctgggtattctttcctggaaactaccccaaaaggaatcgtcccc 526 |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| Sbjct: 5839 tgaacgtgctcattctct-ggtattctttcctggaaactacccaaaaaggaatcgtaccc 5897 Query: 527 atagttgaactttggggtttgcccgtaaaatctgttaaaga 567 ||||||| ||||||||||| | ||||||||||||| ||||| Sbjct: 5898 atagttg-actttggggttag-ccgtaaaatctgtaaaaga 5936 >3x_Contig25 Length = 1081 Score = 157 bits (79), Expect = 5e-38 Identities = 326/399 (81%), Gaps = 7/399 (1%) Strand = Plus / Plus Query: 49 aattgaatcgtcttttgggtcttctgaggaaccggcagagtcatagaaagcttgttcctg 108 |||||||| || |||||||| || ||||||| || ||||| |||||||| ||||| || Sbjct: 431 aattgaatggtgttttgggtgttgtgaggaagggggagagtgatagaaaggttgttggtg 490 Query: 109 tagcagttgcggattct-cagacattctattcttggatattggcaagaagcga-ctcatg 166 ||| ||||| ||||| | |||| ||| |||| ||||||||||| |||||| || || ||| Sbjct: 491 taggagttggggattgtgcagagattgtattgttggatattgggaagaagggagctgatg 550 Query: 167 gttaa-cgtgtac-agttgtatgacctctgatggcatccg-tttaaatattttatttc-t 222 ||||| |||||| |||||||||| | |||||| || | |||||||||||||||| | Sbjct: 551 gttaagcgtgtaggagttgtatgaggtgtgatgggatggggtttaaatattttattttgt 610 Query: 223 tagaggcttcaataacttgtattcc-tcagtggtaactggcgtggtaggagtaatgggat 281 |||||| || ||||| ||||||| | |||||||| ||| ||||||||||||||||||| Sbjct: 611 tagagggttgaataagttgtattgggtgagtggtaagtggggtggtaggagtaatgggat 670 Query: 282 cggcgtcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaatt 341 || || |||||||| ||||||||| ||| |||| ||| |||| |||||| |||||||| Sbjct: 671 gggggtgaagtataagagtgtttaggttaggttgagatagttgagatttaagagtgaatt 730 Query: 342 tgaatatgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaac 401 ||||||||||| || ||| ||||||||| ||||| ||||| || | ||| |||||| Sbjct: 731 tgaatatgatagttgcatgtgtaatattagtgttgggtttatgtggagattggattaaag 790 Query: 402 ccatcttgattattgattggagtttttcgtttaatgatt 440 || |||||||||||||||| ||||| |||||||||| Sbjct: 791 ggatgttgattattgattggactttttgctttaatgatt 829 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7638 Number of Sequences: 1807 Number of extensions: 7638 Number of successful extensions: 66 Number of sequences better than 1.0e-20: 2 length of query: 932 length of database: 10,358,551 effective HSP length: 16 effective length of query: 916 effective length of database: 10,329,639 effective search space: 9461949324 effective search space used: 9461949324 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)