BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG01FM1.SCF screened BAC_end
(884 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1447 0.0
>3x_Contig1793
Length = 40499
Score = 1447 bits (730), Expect = 0.0
Identities = 784/798 (98%), Gaps = 3/798 (0%)
Strand = Plus / Minus
Query: 87 catgcatctggcttctttgtattgttcaatatctcgggcatttgagagatgtttccgcta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12527 catgcatctggcttctttgtattgttcaatatctcgggcatttgagagatgtttccgcta 12468
Query: 147 agttcaatgaaatccatgcagcgtttacaaagtttttagctcatagagaagagtttgttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12467 agttcaatgaaatccatgcagcgtttacaaagtttttagctcatagagaagagtttgttc 12408
Query: 207 aagaatctgcttcgagaggtttaagtattgtgtatgatatgagcgatgctgacatgcggg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12407 aagaatctgcttcgagaggtttaagtattgtgtatgatatgagcgatgctgacatgcggg 12348
Query: 267 agactatggtaaagggactatttaaaacattgacaaactccagttcagcactctcccttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12347 agactatggtaaagggactatttaaaacattgacaaactccagttcagcactctcccttc 12288
Query: 327 aagcaggctcagtgtctggagaaacagaattgtttgacgctggtgttttgagtacaaacg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12287 aagcaggctcagtgtctggagaaacagaattgtttgacgctggtgttttgagtacaaacg 12228
Query: 387 atggatctgtctccacttataaggatattttaaatttggcaaatgaggttaacgatcccg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12227 atggatctgtctccacttataaggatattttaaatttggcaaatgaggttaacgatcccg 12168
Query: 447 gtcttgtatacaagtttatggcattagcaaaaaattcttctttgtggaattctaggaagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167 gtcttgtatacaagtttatggcattagcaaaaaattcttctttgtggaattctaggaagg 12108
Query: 507 gagtcgcgtttggtattggtgctattttttcaaacgtttcgttgcaagatcaacttatca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12107 gagtcgcgtttggtattggtgctattttttcaaacgtttcgttgcaagatcaacttatca 12048
Query: 567 atgactctacactttccaagagactagtccc-aaaactttttagatacagatttgatccc 625
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12047 atgactctacactttccaagagactagtcccaaaaactttttagatacagatttgatccc 11988
Query: 626 tcaacggatgtggccaattcaatggataatatttgggatacactatttccggagggatct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11987 tcaacggatgtggccaattcaatggataatatttgggatacactatttccggagggatct 11928
Query: 686 caagctgttgagaaatatttcgatatcgtgttggaagaagtcctaaccaatttccggaat 745
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 11927 caagctgttgagaaatatttcgatatcgtgttggaagaagtcctaaccaattccgggaat 11868
Query: 746 agagagtggagagtgcgtgaagccttttctgcagcttcttctgcatttagtacaaactta 805
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 11867 agagagtggagagtgcgtgaagcctcttctgcagc-tcttctgcatttagtacaaactta 11809
Query: 806 ttcacttcgaaatttttaaaataaattcaaagaaatttggactgttgcgttcagattact 865
| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11808 tccactcgaaaattttgaaaataaattcgaagaaatttggactgttgcgttcagattac- 11750
Query: 866 tggacaacattaaggaca 883
||||| |||| |||||||
Sbjct: 11749 tggacgacatcaaggaca 11732
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6904
Number of Sequences: 1807
Number of extensions: 6904
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 884
length of database: 10,358,551
effective HSP length: 16
effective length of query: 868
effective length of database: 10,329,639
effective search space: 8966126652
effective search space used: 8966126652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)