BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG01RM1.SCF screened BAC_end
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1076 1596 0.0
>3x_Contig1076
Length = 4245
Score = 1596 bits (805), Expect = 0.0
Identities = 824/828 (99%), Gaps = 2/828 (0%)
Strand = Plus / Minus
Query: 49 atacttgggcctggatcctcttt-aacgttttgacgcagtttgcccttttctctacaagt 107
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3341 atacttgggcctggatcctctttcaacgttttgacgcagtttgcccttttctctacaagt 3282
Query: 108 tcacgactattgtctggtttatttattgatctgttcaccaaatggaactggccaaggatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3281 tcacgactattgtctggtttatttattgatctgttcaccaaatggaactggccaaggatt 3222
Query: 168 cctctcattatattgatgctcttatctgcaatccttgctcaggtaatcattattcatgcg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3221 cctctcattatattgatgctcttatctgcaatccttgctcaggtaatcattattcatgcg 3162
Query: 228 atgaacgtggtgaacatatcttacatcgcaattgcaagtgcaatctcgggtttcacatac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3161 atgaacgtggtgaacatatcttacatcgcaattgcaagtgcaatctcgggtttcacatac 3102
Query: 288 ggtgggcttttcaccatattcccagcattaactcttaatctctggggagatgaggtcttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3101 ggtgggcttttcaccatattcccagcattaactcttaatctctggggagatgaggtcttt 3042
Query: 348 ggtaccgcttacggtacgttcatgttgggacctgcatttggatcttcattttttggcgtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3041 ggtaccgcttacggtacgttcatgttgggacctgcatttggatcttcattttttggcgtc 2982
Query: 408 atgtatgctcaagtacacgattccaattgcaaatcggtcattccagccgccacagccgac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2981 atgtatgctcaagtacacgattccaattgcaaatcggtcattccagccgccacagccgac 2922
Query: 468 cctgtcacttcttctcccaactgcattgtgcctgcatttaccgcctccactattgcacta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2921 cctgtcacttcttctcccaactgcattgtgcctgcatttaccgcctccactattgcacta 2862
Query: 528 gtagtggctctcacaattactataatagcgacggtaaaatctaaaagacttagaagtgcc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2861 gtagtggctctcacaattactataatagcgacggtaaaatctaaaagacttagaagtgcc 2802
Query: 588 taaatactaccaattcccttcataatttaatgtatacacgaacatagataggacgtatgg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2801 taaatactaccaattcccttcataatttaatgtatacacgaacatagataggacgtatgg 2742
Query: 648 tactggaatatctgactttgagtcaagtggaaccattgtccttattgaatcatttgatac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2741 tactggaatatctgactttgagtcaagtggaaccattgtccttattgaatcatttgatac 2682
Query: 708 gagtttcttattttgcccattttttattgccagataatttcaccttttcttcagtacgtg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2681 gagtttcttattttgcccattttttattgccagataatttcaccttttcttcagtacgtg 2622
Query: 768 ttcagttcagtccaaaagaaagacttcanaacgctaaacagaacaaagctaccttttaac 827
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 2621 ttcagttcagtccaaaagaaagacttcaaaacgctaaacagaacaaagctacctttcaac 2562
Query: 828 tttataagattaacagactcttacaagaagtcattgtttgtattaagt 875
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2561 -ttataagattaacagactcttacaagaagtcattgtttgtattaagt 2515
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5584
Number of Sequences: 1807
Number of extensions: 5584
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)