BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG02FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig806 1092 0.0
>3x_Contig806
Length = 2480
Score = 1092 bits (551), Expect = 0.0
Identities = 603/615 (98%), Gaps = 4/615 (0%)
Strand = Plus / Plus
Query: 88 ttaattcaggtttccaaattcaaaaggaaattatggtatcttaagcctgttatcatagtt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1804 ttaattcaggtttccaaattcaaaaggaaattatggtatcttaagcctgttatcatagtt 1863
Query: 148 gttcttgtctttctcctctacactctagatgtcaaacgtttcctatacgtccatcgaaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1864 gttcttgtctttctcctctacactctagatgtcaaacgtttcctatacgtccatcgaaaa 1923
Query: 208 ataactgtcgttagaccatctatcttgccacaaatttggttattgacttgtgcattacaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1924 ataactgtcgttagaccatctatcttgccacaaatttggttattgacttgtgcattacaa 1983
Query: 268 taccgataatgttgaagagtttcctcgccgaacggtttgctcaaatattgtttgtaggct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1984 taccgataatgttgaagagtttcctcgccgaacggtttgctcaaatattgtttgtaggct 2043
Query: 328 atctatccatgcattctcaaaagtcatccattttcttcgttatatgctctatttcttgca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2044 atctatccatgcattctcaaaagtcatccattttcttcgttatatgctctatttcttgca 2103
Query: 388 gttcgttcacacgctccatacgactcacttgcacataccatctcgaatgttgtcttactg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2104 gttcgttcacacgctccatacgactcacttgcacataccatctcgaatgttgtcttactg 2163
Query: 448 tggtttcctcttatccaagctaataagagacaggtaatatctaatatgatagctctataa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2164 tggtttcctcttatccaagctaataagagacaggtaatatctaatatgatagctctataa 2223
Query: 508 cactagatagctttgaaattggatacatcaaatcctattgaaagagtcggtccagtgaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2224 cactagatagctttgaaattggatacatcaaatcctattgaaagagtcggtccagtgaga 2283
Query: 568 atttcaaaatcattatcgaagcttagaaca-gaaaaaactagaaattactggaaaaggaa 626
||||||||||||| ||||||||| |||||| |||||| ||||||||||||| ||||||||
Sbjct: 2284 atttcaaaatcatcatcgaagctcagaacaggaaaaagctagaaattactgtaaaaggaa 2343
Query: 627 aactagaaaagaaagaaaaattcccaggaggaaagtgagctttcctttctttttttggga 686
|||||||||||||||||||| |||||||||| ||||||||||| |||||| |||| |||
Sbjct: 2344 aactagaaaagaaagaaaaa-tcccaggagg-aagtgagcttt-ctttctattttgcgga 2400
Query: 687 aatatatatagtttt 701
|||||||||| ||||
Sbjct: 2401 aatatatatattttt 2415
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8564
Number of Sequences: 1807
Number of extensions: 8564
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)